Comments (4)
Hey Jamie,
I'm not sure what the problem is based on this output. Do you get an error when you run this test command:
Rscript /home/ubuntu/downloads/picrust2/picrust2/Rscripts/castor_hsp.R /home/ubuntu/downloads/picrust2/tests/test_data/hsp/tree.tre /home/ubuntu/downloads/picrust2/default_files/prokaryotic/16S_counts_mean_round_var.txt.gz mp TRUE FALSE predicted_counts_TEST.txt predicted_ci_TEST.txt 10
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Hey Gavin,
Yes, I got an error:
Rscript /home/ubuntu/downloads/picrust2/picrust2/Rscripts/castor_hsp.R /home/ubuntu/downloads/picrust2/tests/test_data/hsp/tree.tre /home/ubuntu/downloads/picrust2/default_files/prokaryotic/16S_counts_mean_round_var.txt.gz mp TRUE FALSE predicted_counts_TEST.txt predicted_ci_TEST.txt 10
Error in options(width = as.integer(howWide)) :
invalid 'width' parameter, allowed 10...10000
Calls: screenWidth -> options
Execution halted
I think I know what's the error. screenWidth()
is used to set the width of console output in R. It has to be between 10 and 10000. Probably you set an invalid number?
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Ah, silly me, screenWidth()
is a custom function that I have defined in my ~/.Rprofile
! I commented it out and all tests pass now. Thank you for your time.
Best,
Jamie
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Glad this was resolved Jamie! :)
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