Comments (2)
jykr
commented on June 18, 2024
Seems to be related to numpy version (tensorflow/tensorflow#559), please reopen if the update does not resolve the issue (without modifying CRISPResso2Align.pyx)
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jykr
commented on June 18, 2024
This error happens with unspecified bases in FASTQ, leading to alignment score over/underflow. Currently bean only supports A/C/T/G for bases. If you need to accommodate special bases, please edit output_path/.aln_mat.txt (
crispr-bean/bean/mapping/GuideEditCounter.py
Line 248 in fb67667
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Related Issues (12)
- Troubleshoot guide index column requirement
- Standardize input column names
- Concat when uns key are not shared HOT 1
- Add example for `bean-create-screen`
- sharedarrray installation error
- Troubleshoot dirty output (Unnamed: X columns)
- don't write intermediate file when not specified HOT 1
- Help with running the examples? HOT 5
- preserve varm, obsm in slicing HOT 1
- Move allele counts from uns to structured dataframe HOT 1
- Update main figures and add usage examples
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