pirovc Goto Github PK
Type: User
Blog: pirovc.github.io
Type: User
Blog: pirovc.github.io
My bashrc favorite confs
Aims at optimal distribution of weighted items to bins (either a fixed number of bins or a fixed number of volume per bin). Data may be in form of list, dictionary, list of tuples or csv-file.
Conda recipes for the bioconda channel.
Implements NCBI Contamination Screen Publicly in CWL
C tools
Lightweight C++ command line option parser
Reprocible analyses accompanying the paper introducing the decontam method
DUDes: a top-down taxonomic profiler for metagenomics and metaproteomics
an automated gap closing tool
Supplement for Frontiers article
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
benchmarking scripts for ganon
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.
Contains the source code for the new k-mer counting algorithm
A Comparison Between Various Lowest Common Ancestor Algorithms
Quick lowest-common-ancestor queries using sparse tables.
MetaBench is a pipeline to run and benchmark metagenomics tools. It covers database construction, taxonomic binning and profiling.
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
Lowest common ancestor (LCA) algorithm implementation in Python
Implementations of LCA and RMQ data structures from "The LCA Problem Revisited"
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
SeqAn's official repository.
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.