Comments (1)
The Dash PdbParser is built on ParmEd and uses the parmed load_files() function to read input pdbs. This should automatically generate bond information even if it is not provided in the input file. Trying to open your PDB file using parmed, it seems that the issue is the first line PARENT N/A
is not recognized by parmed as pertaining to a specific file type. If you remove that line it loads in ATOM and BOND information just fine and it should be able to load them into dashbio.Molecule3dViewer.
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Related Issues (20)
- Update version of igv web app HOT 1
- Browser scrolls and zooms simultaniously NglMoleculeViewer HOT 1
- Molecule3dViewer from .xyz? HOT 1
- More customizable dash-bio Oncoprint features?
- Removing heatmap outline in Circos plot?
- Alignment chart hover display
- Small bug in dash-bio/dash_bio/component_factory/_manhattan.py HOT 1
- Re-enable Speck component tests
- Y axis labels overlapping
- Clustergram documentation error
- Clustergram "row_colors" and "column_colors" properties documentation not clear HOT 2
- jsme in callbacks HOT 1
- Oncoprint error: Cannot read properties of undefined (reading 'displayName') HOT 1
- Molecule3dViewer dynamic height and width
- NglMoleculeViewer downloadImage resets view
- JSME examples don't run - fails to load /jsme/jsme.nocache.js HOT 1
- dash_bio.Circos tooltip wrong position if page is scrolled HOT 2
- ManhattanPlot: Incorrect tooltip information for all variants below threshold HOT 1
- Nonstandard Atom Window Text Input Element Unfocusable HOT 1
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