pombase Goto Github PK
Name: PomBase
Type: Organization
Bio: The S. pombe Genome Database
Location: Cambridge, UK
Blog: https://www.pombase.org
Name: PomBase
Type: Organization
Bio: The S. pombe Genome Database
Location: Cambridge, UK
Blog: https://www.pombase.org
A simple set of scripts to generate a file with all old sgd protein sequences
Regular expression patterns for alllele variant features as described in the publication
Quality control for PomBase alleles
The PomBase community curation tool
A static site with canto documentation for users to get started with Canto.
Code for loading OBO files into a Chado database using COPY (prototype)
Small web app to create the text for the spotlight and adapt the image size
PomBase curation
Modules required to set up the PomBase genome browser
Fission Yeast Phenotype Ontology
A simple interface to create FYPO terms from templates
Extract genes associated to go slims and convert them to gmt format using PomBase API
A modern genome browser built with JavaScript and HTML5.
This is the legacy pombase-loader code from Ensembl Genomes
Code for submitting the pombe genome to NCBI
PomBase code for accessing Chado
Read a PomBase Chado database and write it as JSON
Shared configuration for PomBase projects
Extract the InterPro data for the PomBase proteins and write as JSON
PomBase historic GAF files
Code for handling legacy PomBase data
PomBase Python code
Python web code for the PomBase project
A reference counted String class for PomBase
Reactivated PSI-MOD ontology for molecular mass modifications
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