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diag_pipelines

Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.

dingtalk-sdk

钉钉 dingding Python SDK。 DingTalk SDK for Python http://dingtalk-sdk.readthedocs.io/zh_CN/latest/

django-admin-sortable2

Generic drag-and-drop ordering for objects in the Django admin interface

django-list-wrestler

Make django admin lists easier to sort and collapse.

fastv

An ultra-fast tool to detect and visualize microbial sequences from sequencing data, and can be used to detect viral infectious diseases, like COVID-19.

kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

krakenuniq

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

mbcn_flow

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

pathongs

Pathogen NGS Documentary

pavian

🌈 Interactive analysis of metagenomics data

pyce

Encrypted Python Execution

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

python-docx-template

Use a docx as a jinja2 template

simpleui

A modern theme based on vue+element-ui for django admin.一款基于vue+element-ui的django admin现代化主题。喜欢可以点个star✨

virsorter2

customizable pipeline to identify viral sequences from (meta)genomic data

wechatpy

WeChat SDK for Python