Peter St. John's Projects
A set of utilities for working with Experiment Data Depot instances from python and the command line.
some code for linlog model simulation
Docker recipe for pymc3, theano, and the emll library
Build, view, share, and embed pathway maps.
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
Fairseq modeling for protein function prediction from primary sequence
A library for efficient similarity search and clustering of dense vectors.
Fast Function Extraction
Methods for bayesian regression of molecules from their carbon fragments
Calculation of the NREL index for Fuel D blends
Using language models to engineer the gapn enzyme to switch from the cofactor NADPH to NADH.
Demonstrate training a GNN for molecular property prediction
Keras + Hyperopt: A very simple wrapper for convenient hyperparameter optimization
Distributed Asynchronous Hyperparameter Optimization in Python
A conda-smithy repository for ipopt.
Deep Learning for humans
Keras implementation of Neural Graph Fingerprints as proposed by Duvenaud et al., 2015
Lightweight Toolbox for LaTeX - New Official repository
A website to host information on our upcoming wedding in the nerdiest way possible
Reproducible manuscript builds to DOC and PDF via pandoc and docker
matplotlib: plotting with Python
A conda-smithy repository for mumps.
dockerfile and environment for a cuda / conda based faiss image
Peter's github page
optlang - sympy based mathematical programming language
Python scripts and resulting trained models for optoelectronic property predictions
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
Docker container for Pandoc with Latex tools