Comments (1)
Nevermind, I just figured out that pileupread.qpos was replaced with .query_position by commit 6d43e61
from pysam.
Related Issues (20)
- AttributeError: module 'array' has no attribute 'typecode'
- from pysam.libchtslib import * ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory
- AlignmentHeader.from_dict() silently discards the TP attribute from SQ lines HOT 3
- Failed to build pysam wheel, throws Cython error.
- reconsituted AlignedSegment is not equivalent to original HOT 1
- running samtools view command produces no output HOT 1
- Cython version requirements (are varying for different Python releases) HOT 3
- Test for equality of FastxRecord HOT 3
- Seeking assistance HOT 1
- pysam.FastaFile reverse-complement function?
- PileupColumn.get_query_positions() behavior differs from PileupRead.query_position
- Pysam.TabixFile not recognising S3 URL HOT 1
- I want to use pysam to get the PS number in the vcf file HOT 1
- infer_query_length ignores soft-clipped (S) bases HOT 3
- Fails to build with Python3.12 HOT 2
- Why is the site coverage of pileup different from that observed by igv? HOT 2
- CIGAR ops names in docs don't match the ones in the code
- pileup() in 0.22 is slower than 0.16.0.1
- Pysam returning libcurl error 77 when accessing public S3 file? HOT 2
- Allow accessing "END" as an info field to enable parsing of inter-chr SVs HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from pysam.