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100-days-of-ml-code

100-Days-Of-ML-Code中文版

100days-ml-code

100天机器学习 （翻译+ 实操）

awesome-nanopore

A curated list of awesome nanopore analysis tools.

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

canu

A single molecule sequence assembler for genomes large and small.

clair3

Clair3 - Integrating pileup and full-alignment for high-performance long-read variant calling

cramino

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads

deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads

dena

Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.

dena-deal

Data processing of DENA prediction.

dorado

Oxford Nanopore's Basecaller

epinano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads

fast5_research

Fast5 API provided by ONT Research

homopolish

High-quality Nanopore-only genome polisher

juncbase

Junction Based Analysis of Splicing Events for RNA-Seq

kmer_models

Predictive kmer models for development use

longgf

A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing

longread_tutorials

Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data

master_of_pores

Nextflow pipeline for analysis of direct RNA Nanopore reads

medaka

Sequence correction provided by ONT Research

methplotlib

Plotting tools for nanopore methylation data

miso

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

nanocompore

RNA modifications detection from Nanopore dRNA-Seq data

nanocorrect

Experimental pipeline for correcting nanopore reads

nanomonsv

SV detection tool for nanopore sequence reads

nanopore-scripts

Various scripts and recipes for working with nanopore data

nanoseq

Nanopore demultiplexing, QC and alignment pipeline

nanosplicer

nanosv

SV caller for nanopore data

ont_fast5_api

Oxford Nanopore Technologies fast5 API software