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18.s191_julia.comthinking

This is the exercises and applications of Julia computing thinking from MIT.

augur-nextstrain

Pipeline components for real-time phylodynamic analysis

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-public-datasets

A topic-centric list of HQ open datasets.

awesome-rshiny

An awesome R-shiny list!

bioinformatics-analysis-of-sars-cov-2

This repo contains all my exploration analysis of SARS-Cov-2 data, omics analysis, Network interaction, ML related analysis...

bioinformatics-tools-summary

This repo summaries the main bioinformatics tools.

caffe

Caffe: a fast open framework for deep learning.

capita-selective-in-bioinformatics

This repo consists the content of the whole course, slides, paper and later some code

comet

An open source tandem mass spectrometry (MS/MS) sequence database search tool.

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE - dashboard display of data(analysis)

covid-19-data

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

dashboard---playground

The app contains info about Rshiny, python dashboard.

diffdynprog.jl

Gradients for dynamic programming

epicov_downloader

Download all EpiCoV sequcnes from GISAID

gatk

Official code repository for GATK versions 4 and up

geckodriver

WebDriver for Firefox

gisaid-scrapper

Scrapping tool for GISAID data regarding SARS-CoV-2

git-demo

thisi a demo

gwas-data-sources

Public data sources, database and publications

hyphy

HyPhy: Hypothesis testing using Phylogenies

jekyll

:globe_with_meridians: Jekyll is a blog-aware static site generator in Ruby

julia

The Julia Language: A fresh approach to technical computing.

keras

Deep Learning for humans

kruschke-doing_bayesian_data_analysis

John K. Kruschke's Doing Bayesian Data Analysis: A Tutorial with R and BUGS

libauc

LibAUC: A Deep Learning Library for X-Risk Optimization -- multi-label-prediction

mcscanx

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

medical-image-analysis---ai

ml-dl-resources

The repo lists resources of ML&DL

ml_zhihua-zhou

This repo is the main points of the book of "Machine learning" by Zhihua-Zhou. The exercises are done using R, Python and Julia, respectively.