Comments (6)
ebolyen
commented on August 18, 2024
from q2-dada2.
nbokulich
commented on August 18, 2024
from q2-dada2.
ebolyen
commented on August 18, 2024
from q2-dada2.
ebolyen
commented on August 18, 2024
from q2-dada2.
benjjneb
commented on August 18, 2024
This information is straightforward to write out from the R side, as long as there is a defined file format to use. My assumption is that is the way to go, since it sounds like you want that information as an artifact that can be visualized with other Q2 functions?
from q2-dada2.
ebolyen
commented on August 18, 2024
Yup! I think our plan at this point is to write it out as something like SampleData[DADA2Stats] or similar. This would be an artifact viewable as metadata and could be used with qiime metadata tabulate or wherever else metadata can be used. The only real work will be mapping the filepaths to sample IDs, but that's very simple also.
from q2-dada2.
Related Issues (20)
- Add more DADA2 parameters to the wrapper HOT 3
- Allow denoise-single to process either reverse or forward reads HOT 3
- Add long-read support HOT 27
- Certain ID schemes can become mixed up with barcodes during sorting HOT 3
- I've gone through tutorials and forums and still don't understand how to select the truncLen and trim parameters in dada2 HOT 1
- denoise-paired: add % merged to stats output
- expose minOverlap parameter HOT 10
- denoise-paired: expose matchIDs parameter HOT 3
- Error in sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE)) HOT 13
- Update denoise-paired document from minimum overlap 20 > 12nt
- Setting "allowOneOf" and "maxMismatch" parameters in q2/dada2 plugin HOT 1
- dada2 justConcatenate HOT 6
- Update to latest DADA2 for R 4.0 support HOT 1
- dada2 drops samples without reads unfiltered reads from table but not denoising stats. HOT 1
- Restructuring dada2 R/python code
- error while using dada2 in qiime2 HOT 1
- ENH: include error model plots in denoise-* output HOT 3
- Importing DADA2 R rep. sequences into QIIME2 HOT 1
- Can not run qiime dada2 denoise-ccs without primers or adapters HOT 4
- Add warning when pooling method and chimera detection method are misaligned HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from q2-dada2.