Comments (2)
thermokarst
commented on August 17, 2024
I just spent a little time looking into this --- it looks like summarize does handle a single sample (confirmed via tests):
It looks like we already have a single-sample guard in place, so perhaps this is actually a case of having no sequences in a sample?
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thermokarst
commented on August 17, 2024
This appears to no longer be an issue, from the Seaborn Changelog (v0.8.1):
Improved robustness of kdeplot() and distplot() to data with fewer than two observations.
I spent some time this morning feeding all kinds of bad data into summarize and was unable to break it.
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Related Issues (20)
- demux: should golay-error-correction be False by default? HOT 9
- poor demux summarize error message when summarizing empty demux
- New/Improved visualization for Golay statistics HOT 2
- Improve warning in demux command HOT 1
- Bespoke viz for error-correction-details?
- Plot and 7-number summaries off-by-one HOT 1
- invalid sample-id values run successfully through demux without errors, probably shouldn't. HOT 1
- [object Object] in `demux summarize` output
- IMP: More concise metadata error handling for qiime demux emp-single
- new action to generate `ImmutableMetadata` of sequence per sample counts for`SampleData[*SequencesWithQuality]` artifacts
- MAINT: migrate types/formats/transformers to q2-types for more general access HOT 2
- emtpy samples should be (optionally) filtered after `subsample-*` actions
- Add citations HOT 1
- Better validation of barcodes column HOT 3
- summarize unable to parse sample IDs with # in ID name
- add subsample method
- New method: filter SampleData[*SequencesWithQuality] HOT 2
- Table header misplaced in demux summarize visualizations
- emp_single fails when the `ec_details` list is empty HOT 3
- Golay error correction assumes barcodes are reverse complemented HOT 3
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