Comments (5)
ebolyen
commented on June 19, 2024
Perhaps a pseudo qiime user with 777 as permissions? We definitely don't want to leak system information in these artifacts.
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wasade
commented on June 19, 2024
What about 666 for files and 777 for directories? 777 makes sense for
executable files.
I can see benefit in 444 for some files...
On Mar 8, 2016 10:21 AM, "Evan Bolyen" [email protected] wrote:
Perhaps a pseudo qiime user with 777 as permissions? We definitely don't
want to leak system information in these artifacts.—
Reply to this email directly or view it on GitHub
#14 (comment).
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antgonza
commented on June 19, 2024
I'm not 100% sure we need to worry about this in qiime2. Should this be handled by the tools using qiime2?
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jairideout
commented on June 19, 2024
This is QIIME 2's responsibility because it defines and implements the .qtf format, and we don't want to leak system information in artifacts. Note that we're talking about file permissions for files that are added to the tar archive.
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jairideout
commented on June 19, 2024
Closing as new .qza/.qzv archive format is ZIP64-based which doesn't have file metadata like this to set.
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Related Issues (20)
- 'qiime metadata tabulate' command is wrong only 'taxonomy.qza' to 'taxonomy.qzv' HOT 2
- Pipeline nodes don't know about their underlying node's citations HOT 1
- Allow `Usage.action` to identify output types more flexibly. HOT 3
- Using Singularity to pull docker image gets "manifest unknown" error HOT 1
- Plugin error from dada2 HOT 1
- Need to replicate the same DADA2 options in R into qiime2 with PacBio CCS reads HOT 1
- Error message in samples.demux.summary.qzv of PacBio 16S ccs reads HOT 1
- Could not install Qiime configuration as i get this message on Anaconda: Unable to locally verify the issuer's authority. To connect to data.qiime2.org insecurely, use `--no-check-certificate HOT 5
- enable metadata merging when no sample ids overlap HOT 4
- more informative error message on bad characters in output names
- Errors building QIIME2 environment using latest mamba version and strict channel priority HOT 1
- qiime2 import error due to multiple users needing to access /tmp/qiime2 on Ubuntu server HOT 6
- Handle pickling manual registration of plugins in PluginManager
- enable registered descriptions of semantic types and formats HOT 1
- Creating metadata for dada2 output in qiime2 HOT 1
- imp: adds `run_commands` utility function to the framework
- imp: support for obtaining artifacts/metadata from URLs in usage examples
- imp: adds action for `depreciated_alias` parameter
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- ValueError: unsupported format character 'T' (0x54) at index 3312 when creating environment from environment file HOT 8
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