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2012-paper-diginorm

Paper source, analysis notebook, and data generation/analysis scripts for diginorm paper

2013-16scompare

2013-diversity

Using the concept of informative genomic segment to investigate microbial diversity of metagenomics sample

2013-khmer-counting

Paper code: "These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure"

2014-04-14-pycon-ngs

Next-Generation Sequencing workshop at PyCon

2014-gpgc

2014-streaming

2014-virus-meta

2015-05-28-monsanto

2016-02-22-isu

2016-03-01-jupyter

awesome-mle-resource

blastkit

bookrecommendations

This is a repo for book recommendations for 2015-05-28-monsanto SWC workshop

boot-camps

Software Carpentry boot camp material

coding-challenge

Challenge for Insight Data Engineering

cpython

The Python programming language

dib-lab

Issue tracker and Web site for the Lab for Data Intensive Biology at UC Davis.

git-novice

Software Carpentry introduction to Git for novices.

githubpages

igs-diversity

microbial diversity analysis package based on IGS for whole-genome shotgun metagenomic data

insightdataengineeringvenmoplus

jgi-vica

Classifying virus DNA sequences using large scale machine learning with Apache Spark

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

khmer-recipes

kmerthon_run

Kmerthon

nextflow

A DSL for data-driven computational pipelines

nullgraph

other

poster