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tomsasani avatar tomsasani commented on August 10, 2024

These two should be included in the requirements.txt file at the moment (bx-python==0.9.0 and pyfaidx==0.7.2.1) -- I'm able to run the full pipeline with a fresh install of the requirements on my end. Could you share a more detailed error message?

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gtsambos avatar gtsambos commented on August 10, 2024

Hmm, strange. Maybe I wasn't paying close enough attention to the terminal messages when I was installing the requirements.txt file. I've since noticed this behaviour with a few other packages in this file (eg. numba), so I'll assume it's a problem on my end and close the issue.

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gtsambos avatar gtsambos commented on August 10, 2024

statsmodels might genuinely be missing

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tomsasani avatar tomsasani commented on August 10, 2024

Ahh, I believe statsmodels should be installed as a dependency of statannotations -- but probably a good idea to include that as its own requirement. To be safe, I think I might just update the requirements.txt to be a pip freeze of the complete env needed to reproduce figs/analysis.

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