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bamtools

C++ API & command-line toolkit for working with BAM data

bayesian_hdx

Support code for HDX data reduction

bendit

Prediction of DNA curvature from DNA sequences

bioc

Bioinformatics tools in C

bionotebook

birdseed2vcf

Convert birdseed variant file with genotypes to a VCF file

containers

Bioinformatics containers

cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

diffexpir

Differentially expressed intron retention

diffexpir-notebook

This repository includes the Jupyter Notebooks for detecting Differentially Expressed Intron Retention from RNA-Seq data

diffexpirweb

This is a Django web app to visualize differentially expressed intron retention detected by DiffExpIR

gooddoc

A Template for Clear and Simple Documentation of Bioinformatics Code

gtools

hdxer

HDXer is a package to compute Hydrogen-Deuterium exchange data from biomolecular simulations, compare to experiment, and perform ensemble refinement to fit a structrual ensemble to the experimental data

idr

IDR

jbiowh-core

jbiowh-dbms

jbiowh-desktop

jbiowh-googlecode-wiki

jbiowh-parser

jbiowh-persistence

jbiowh-webservices

jbiowh-webservices-client

ncservice

pm4ngs-rnaseq-tutorial

rnaquast

Quality assessment of de novo transcriptome assemblies from RNA-Seq data

rnaseqwf

This code shows the validation of Differential Gene Expression Analysis from RNASeq data using as quantificator tools TPMCalculator

sandbox

work place for new or broken containers

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks