radaniba Goto Github PK

2015

Public material for CS109

addict

The Python Dict that's better than heroin.

ai_notes

machine learning/artificial intelligence notes

awesome

A curated list of awesome lists

awesome-public-datasets

An awesome list of high-quality open datasets in public domains (on-going).

bam-readcount

count DNA sequence reads in BAM files

basic-bioinf-utilities

Basic bioinformatics utilities by Weronika - useful standalone, and needed for many other packages.

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bioinformatics

bioinformatics-scripts

Miscellaneous bioinformatics scripts

bioinformatics-tools

Awk, bash, python scripts for processing NGS data

bioruby-ngs

This plugins is intended to wrap the common software used for Next Generation Sequencing data

cgat

CGAT - Computational Genomics Analysis Tools

code_py

A collection of well-commented code snippets for data science

coderscrowd

CodersCrowds's blog posts, free to anyone to clone and contribute, added posts will be posted as guest posts at CodersCrowd's website

cutadapt

cutadapt removes adapter sequences from DNA sequencing reads

dat4

General Assembly's Data Science course in Washington, DC

dat5

General Assembly's Data Science course in Washington, DC

data-science-ipython-notebooks

Continually updated data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe), scikit-learn, Kaggle, Spark, Hadoop MapReduce, HDFS, matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines. https://bit.ly/data-notes

demultadapt

demultadapt - demultiplex fastq file

docker-terminal

A terminal for Docker containers in js!

dual_barcode_demultiplex

Python script to demultiplex dual-barcode fastq files

elasticsearch-definitive-guide

fluidix_merge

gatk-script

genomics

Scripts, utilities and programs for genomic bioinformatics.

gridmap

Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).

gridtk

SGE wrappers to submit grid jobs at Idiap

homebrew-neovim

interviews

Random questions to ask during interviews.