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raphaelvallat avatar raphaelvallat commented on August 15, 2024

Hi,

Have you solved the problem? There's clearly something off with the way that the annotations are parsed into EDFBrowser, because each discrete epoch should be 30-seconds. Based on your screenshot, it seems that the epochs are interpreted by EDFBrowser to have roughly ~1-sec duration, which is clearly wrong.

To generate a confusion matrix you need to:

  1. Get the YASA predicted sleep stages
  2. Load the reference sleep stages into a numpy array or a pandas series, with the same label mapping as YASA (e.g. 0 = Wake, 1 = N1, etc)
  3. Use scikit-learn to calculate and/or plot the confusion matrix.

Thanks
Raphael

from yasa.

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