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ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

arboreto

A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

beeline

BEELINE: evaluation of algorithms for gene regulatory network inference

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

deepsem

diane

Dashboard for the Inference and Analysis of Networks from Expression data

fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

genept

nextflow_pipelines

The set of NGS processing pipelines used at Babraham

nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.