Comments (33)
eddelbuettel
commented on August 20, 2024
1
Thanks for the bug report. I can certainly lower the comparison epsilon for that machine, or in general. It is a bit surprising that hasn't raised its head before -- this is not new code. Any idea?
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eddelbuettel
commented on August 20, 2024
1
Just to be explicit you did NOT change the sensitivity of the two previous tests which now pass after you took care of malloc() (which had also produced considerable noise before) ?
If so congrats but please close this. Seems like there never was an issue.
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barracuda156
commented on August 20, 2024
1
@eddelbuettel Yes, I ran tests prior to changing anything, and they pass now. Thank you for your help!
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nunotexbsd
commented on August 20, 2024
1
Ok, understand it.
I'm maintaining FreeBSD port https://www.freshports.org/math/R-cran-RcppArmadillo/ and this is the first time that I'm using tests.
I will need to patch wisely since port is builded in: aarch64, amd64, armv6, armv7, i386, powerpc, powerpc64 and powerpc64le arches.
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eddelbuettel
commented on August 20, 2024
1
And I am of course in favour of ports, and tests. But "sometimes things differ" and it may just be best to keep a local directory patches/ and for-loop over them to adjust against upstream. We do the same in Debian (where I have been a maintainer for coming up on 30 years ...).
Your "wise patch" would be appreciated because what had been suggested so far is a global change for all builds everywhere all the time which is surely a little more far-reaching and why I hesitate which I hope you understand.
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nunotexbsd
commented on August 20, 2024
1
Ok, I will make tests on amd64/i386 aarch64/armv7 for a start.
I will share my patch progression soon(TM).
Thanks!
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eddelbuettel
commented on August 20, 2024
1
The || between 4 and 8 means that just about every machine will now have the lowered threshold. Not something I would distribute to all users of RcppArmadillo but if that is what you think you need to do I am glad you have closure.
You could alternatively also just document that a test is behaving differently and skip it (via the patch). I do that sometimes for projects and specific settings.
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barracuda156
commented on August 20, 2024
R version 4.2.2 (2022-10-31) -- "Innocent and Trusting"
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>
> if (requireNamespace("tinytest", quietly=TRUE)) {
+ tinytest::test_package("RcppArmadillo")
+ }
R(51976) malloc: *** error for object 0xa0d51754: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0xa0d517c4: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e52c0: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e4928: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e4890: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e48dc: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e47c8: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e46a0: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e45c0: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e4630: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e44f8: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e5200: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e5380: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e538c: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
R(51976) malloc: *** error for object 0x34e53a8: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 0 tests
test_Rlapack.R................ 1 tests �[0;32mOK�[0m
test_Rlapack.R................ 2 tests �[0;32mOK�[0m
test_Rlapack.R................ 3 tests �[0;32mOK�[0m
test_Rlapack.R................ 4 tests �[0;32mOK�[0m
test_Rlapack.R................ 5 tests �[0;32mOK�[0m
test_Rlapack.R................ 6 tests �[0;32mOK�[0m
test_Rlapack.R................ 7 tests �[0;32mOK�[0m �[0;34m48.0s�[0m
test_complex.R................ 0 tests
test_complex.R................ 0 tests
test_complex.R................ 0 tests
test_complex.R................ 0 tests
test_complex.R................ 0 tests
test_complex.R................ 0 tests
test_complex.R................ 0 tests
test_complex.R................ 0 tests
test_complex.R................ 0 tests
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test_complex.R................ 0 tests
test_complex.R................ 1 tests �[0;32mOK�[0m
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test_complex.R................ 4 tests �[0;32mOK�[0m
test_complex.R................ 5 tests �[0;32mOK�[0m
test_complex.R................ 6 tests �[0;32mOK�[0m
test_complex.R................ 7 tests �[0;32mOK�[0m
test_complex.R................ 8 tests �[0;32mOK�[0m
test_complex.R................ 9 tests �[0;32mOK�[0m
test_complex.R................ 10 tests �[0;32mOK�[0m
test_complex.R................ 11 tests �[0;32mOK�[0m �[0;34m39.9s�[0m
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test_cube.R................... 0 tests
test_cube.R................... 0 tests
test_cube.R................... 0 tests
test_cube.R................... 0 tests
test_cube.R................... 0 tests
test_cube.R................... 1 tests �[0;32mOK�[0m
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test_cube.R................... 4 tests �[0;32mOK�[0m
test_cube.R................... 5 tests �[0;32mOK�[0m
test_cube.R................... 6 tests �[0;31m1 fails�[0m
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test_cube.R................... 6 tests �[0;31m1 fails�[0m
test_cube.R................... 7 tests �[0;31m1 fails�[0m
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test_fastLm.R................. 8 tests �[0;32mOK�[0m
test_fastLm.R................. 8 tests �[0;32mOK�[0m
test_fastLm.R................. 8 tests �[0;32mOK�[0m
test_fastLm.R................. 9 tests �[0;32mOK�[0m
test_fastLm.R................. 10 tests �[0;32mOK�[0m
test_fastLm.R................. 11 tests �[0;32mOK�[0m
test_fastLm.R................. 12 tests �[0;32mOK�[0m
test_fastLm.R................. 12 tests �[0;32mOK�[0m
test_fastLm.R................. 12 tests �[0;32mOK�[0m
test_fastLm.R................. 13 tests �[0;32mOK�[0m
test_fastLm.R................. 14 tests �[0;32mOK�[0m
test_fastLm.R................. 15 tests �[0;32mOK�[0m
test_fastLm.R................. 16 tests �[0;32mOK�[0m
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test_fastLm.R................. 16 tests �[0;32mOK�[0m
test_fastLm.R................. 17 tests �[0;32mOK�[0m
test_fastLm.R................. 18 tests �[0;32mOK�[0m
test_fastLm.R................. 19 tests �[0;32mOK�[0m
test_fastLm.R................. 20 tests �[0;32mOK�[0m
test_fastLm.R................. 20 tests �[0;32mOK�[0m
test_fastLm.R................. 20 tests �[0;32mOK�[0m
test_fastLm.R................. 20 tests �[0;32mOK�[0m
test_fastLm.R................. 21 tests �[0;32mOK�[0m
test_fastLm.R................. 22 tests �[0;32mOK�[0m
test_fastLm.R................. 23 tests �[0;32mOK�[0m
test_fastLm.R................. 24 tests �[0;32mOK�[0m
test_fastLm.R................. 25 tests �[0;32mOK�[0m
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test_fastLm.R................. 27 tests �[0;32mOK�[0m
test_fastLm.R................. 28 tests �[0;32mOK�[0m
test_fastLm.R................. 29 tests �[0;32mOK�[0m
test_fastLm.R................. 29 tests �[0;32mOK�[0m
test_fastLm.R................. 30 tests �[0;32mOK�[0m �[0;34m0.2s�[0m
test_fields.R................. 0 tests
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test_fields.R................. 3 tests �[0;32mOK�[0m
test_fields.R................. 3 tests �[0;32mOK�[0m
test_fields.R................. 4 tests �[0;32mOK�[0m
test_fields.R................. 5 tests �[0;32mOK�[0m
test_fields.R................. 5 tests �[0;32mOK�[0m
test_fields.R................. 6 tests �[0;32mOK�[0m
test_fields.R................. 6 tests �[0;32mOK�[0m
test_fields.R................. 7 tests �[0;32mOK�[0m
test_fields.R................. 8 tests �[0;32mOK�[0m
test_fields.R................. 8 tests �[0;32mOK�[0m
test_fields.R................. 9 tests �[0;32mOK�[0m
test_fields.R................. 10 tests �[0;32mOK�[0m
test_fields.R................. 10 tests �[0;32mOK�[0m
test_fields.R................. 11 tests �[0;32mOK�[0m
test_fields.R................. 12 tests �[0;32mOK�[0m
test_fields.R................. 12 tests �[0;32mOK�[0m
test_fields.R................. 13 tests �[0;32mOK�[0m
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test_fields.R................. 14 tests �[0;32mOK�[0m
test_fields.R................. 15 tests �[0;32mOK�[0m
test_fields.R................. 16 tests �[0;32mOK�[0m
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test_fields.R................. 18 tests �[0;32mOK�[0m
test_fields.R................. 18 tests �[0;32mOK�[0m
test_fields.R................. 19 tests �[0;32mOK�[0m
test_fields.R................. 19 tests �[0;32mOK�[0m
test_fields.R................. 20 tests �[0;32mOK�[0m
test_fields.R................. 20 tests �[0;32mOK�[0m
test_fields.R................. 21 tests �[0;32mOK�[0m
test_fields.R................. 21 tests �[0;32mOK�[0m
test_fields.R................. 22 tests �[0;32mOK�[0m
test_fields.R................. 22 tests �[0;32mOK�[0m
test_fields.R................. 23 tests �[0;32mOK�[0m �[0;34m39.3s�[0m
test_fields_new.R............. 0 tests
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test_fields_new.R............. 0 tests
test_fields_new.R............. 1 tests �[0;32mOK�[0m
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test_fields_new.R............. 4 tests �[0;32mOK�[0m
test_fields_new.R............. 5 tests �[0;32mOK�[0m
test_fields_new.R............. 6 tests �[0;32mOK�[0m
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test_fields_new.R............. 8 tests �[0;32mOK�[0m
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test_fields_new.R............. 17 tests �[0;32mOK�[0m
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test_fields_new.R............. 18 tests �[0;32mOK�[0m
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test_fields_new.R............. 23 tests �[0;32mOK�[0m
test_fields_new.R............. 24 tests �[0;32mOK�[0m
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test_fields_new.R............. 29 tests �[0;32mOK�[0m
test_fields_new.R............. 29 tests �[0;32mOK�[0m
test_fields_new.R............. 30 tests �[0;32mOK�[0m
test_fields_new.R............. 30 tests �[0;32mOK�[0m
test_fields_new.R............. 31 tests �[0;32mOK�[0m
test_fields_new.R............. 31 tests �[0;32mOK�[0m
test_fields_new.R............. 32 tests �[0;32mOK�[0m
test_fields_new.R............. 32 tests �[0;32mOK�[0m
test_fields_new.R............. 33 tests �[0;32mOK�[0m
test_fields_new.R............. 33 tests �[0;32mOK�[0m
test_fields_new.R............. 34 tests �[0;32mOK�[0m
test_fields_new.R............. 34 tests �[0;32mOK�[0m
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test_misc.R................... 5 tests �[0;32mOK�[0m
test_misc.R................... 5 tests �[0;32mOK�[0m
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test_rcpparmadillo.R.......... 19 tests �[0;32mOK�[0m
test_rcpparmadillo.R.......... 19 tests �[0;32mOK�[0m
test_rcpparmadillo.R.......... 19 tests �[0;32mOK�[0m
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test_rcpparmadillo.R.......... 20 tests �[0;32mOK�[0m
test_rcpparmadillo.R.......... 20 tests �[0;32mOK�[0m
test_rcpparmadillo.R.......... 21 tests �[0;32mOK�[0m
test_rcpparmadillo.R.......... 21 tests �[0;32mOK�[0m
test_rcpparmadillo.R.......... 21 tests �[0;32mOK�[0m
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test_rcpparmadillo.R.......... 22 tests �[0;32mOK�[0m
test_rcpparmadillo.R.......... 22 tests �[0;32mOK�[0m
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test_rcpparmadillo.R.......... 23 tests �[0;32mOK�[0m
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test_sparseConversion.R....... 43 tests �[0;32mOK�[0m
test_sparseConversion.R....... 43 tests �[0;32mOK�[0m
test_sparseConversion.R....... 43 tests �[0;32mOK�[0m
test_sparseConversion.R....... 43 tests �[0;32mOK�[0m
test_sparseConversion.R....... 44 tests �[0;32mOK�[0m
test_sparseConversion.R....... 44 tests �[0;32mOK�[0m
test_sparseConversion.R....... 44 tests �[0;32mOK�[0m
test_sparseConversion.R....... 44 tests �[0;32mOK�[0m
test_sparseConversion.R....... 44 tests �[0;32mOK�[0m
test_sparseConversion.R....... 44 tests �[0;32mOK�[0m
test_sparseConversion.R....... 45 tests �[0;32mOK�[0m
test_sparseConversion.R....... 45 tests �[0;32mOK�[0m
test_sparseConversion.R....... 45 tests �[0;32mOK�[0m
test_sparseConversion.R....... 45 tests �[0;32mOK�[0m
test_sparseConversion.R....... 45 tests �[0;32mOK�[0m
test_sparseConversion.R....... 45 tests �[0;32mOK�[0m
test_sparseConversion.R....... 45 tests �[0;32mOK�[0m
test_sparseConversion.R....... 46 tests �[0;32mOK�[0m
test_sparseConversion.R....... 46 tests �[0;32mOK�[0m
test_sparseConversion.R....... 46 tests �[0;32mOK�[0m
test_sparseConversion.R....... 46 tests �[0;32mOK�[0m
test_sparseConversion.R....... 46 tests �[0;32mOK�[0m
test_sparseConversion.R....... 46 tests �[0;32mOK�[0m
test_sparseConversion.R....... 47 tests �[0;32mOK�[0m
test_sparseConversion.R....... 47 tests �[0;32mOK�[0m
test_sparseConversion.R....... 47 tests �[0;32mOK�[0m
test_sparseConversion.R....... 47 tests �[0;32mOK�[0m
test_sparseConversion.R....... 47 tests �[0;32mOK�[0m
test_sparseConversion.R....... 47 tests �[0;32mOK�[0m
test_sparseConversion.R....... 48 tests �[0;32mOK�[0m
test_sparseConversion.R....... 48 tests �[0;32mOK�[0m
test_sparseConversion.R....... 48 tests �[0;32mOK�[0m
test_sparseConversion.R....... 48 tests �[0;32mOK�[0m
test_sparseConversion.R....... 48 tests �[0;32mOK�[0m
test_sparseConversion.R....... 49 tests �[0;32mOK�[0m
test_sparseConversion.R....... 49 tests �[0;32mOK�[0m
test_sparseConversion.R....... 49 tests �[0;32mOK�[0m
test_sparseConversion.R....... 50 tests �[0;32mOK�[0m
test_sparseConversion.R....... 50 tests �[0;32mOK�[0m
test_sparseConversion.R....... 50 tests �[0;32mOK�[0m
test_sparseConversion.R....... 50 tests �[0;32mOK�[0m
test_sparseConversion.R....... 50 tests �[0;32mOK�[0m
test_sparseConversion.R....... 50 tests �[0;32mOK�[0m
test_sparseConversion.R....... 50 tests �[0;32mOK�[0m
test_sparseConversion.R....... 50 tests �[0;32mOK�[0m
test_sparseConversion.R....... 51 tests �[0;32mOK�[0m
test_sparseConversion.R....... 51 tests �[0;32mOK�[0m
test_sparseConversion.R....... 51 tests �[0;32mOK�[0m
test_sparseConversion.R....... 51 tests �[0;32mOK�[0m
test_sparseConversion.R....... 51 tests �[0;32mOK�[0m
test_sparseConversion.R....... 51 tests �[0;32mOK�[0m
test_sparseConversion.R....... 51 tests �[0;32mOK�[0m
test_sparseConversion.R....... 51 tests �[0;32mOK�[0m
test_sparseConversion.R....... 51 tests �[0;32mOK�[0m
test_sparseConversion.R....... 51 tests �[0;32mOK�[0m
test_sparseConversion.R....... 52 tests �[0;32mOK�[0m
test_sparseConversion.R....... 52 tests �[0;32mOK�[0m
test_sparseConversion.R....... 52 tests �[0;32mOK�[0m
test_sparseConversion.R....... 52 tests �[0;32mOK�[0m
test_sparseConversion.R....... 52 tests �[0;32mOK�[0m
test_sparseConversion.R....... 52 tests �[0;32mOK�[0m
test_sparseConversion.R....... 52 tests �[0;32mOK�[0m
test_sparseConversion.R....... 53 tests �[0;32mOK�[0m
test_sparseConversion.R....... 53 tests �[0;32mOK�[0m
test_sparseConversion.R....... 53 tests �[0;32mOK�[0m
test_sparseConversion.R....... 53 tests �[0;32mOK�[0m
test_sparseConversion.R....... 54 tests �[0;32mOK�[0m
test_sparseConversion.R....... 54 tests �[0;32mOK�[0m
test_sparseConversion.R....... 54 tests �[0;32mOK�[0m
test_sparseConversion.R....... 54 tests �[0;32mOK�[0m
test_sparseConversion.R....... 54 tests �[0;32mOK�[0m
test_sparseConversion.R....... 54 tests �[0;32mOK�[0m
test_sparseConversion.R....... 55 tests �[0;32mOK�[0m
test_sparseConversion.R....... 55 tests �[0;32mOK�[0m
test_sparseConversion.R....... 55 tests �[0;32mOK�[0m
test_sparseConversion.R....... 55 tests �[0;32mOK�[0m
test_sparseConversion.R....... 55 tests �[0;32mOK�[0m
test_sparseConversion.R....... 55 tests �[0;32mOK�[0m
test_sparseConversion.R....... 56 tests �[0;32mOK�[0m
test_sparseConversion.R....... 56 tests �[0;32mOK�[0m
test_sparseConversion.R....... 56 tests �[0;32mOK�[0m
test_sparseConversion.R....... 56 tests �[0;32mOK�[0m
test_sparseConversion.R....... 56 tests �[0;32mOK�[0m
test_sparseConversion.R....... 56 tests �[0;32mOK�[0m
test_sparseConversion.R....... 57 tests �[0;32mOK�[0m
test_sparseConversion.R....... 57 tests �[0;32mOK�[0m
test_sparseConversion.R....... 57 tests �[0;32mOK�[0m
test_sparseConversion.R....... 57 tests �[0;32mOK�[0m
test_sparseConversion.R....... 57 tests �[0;32mOK�[0m
test_sparseConversion.R....... 57 tests �[0;32mOK�[0m
test_sparseConversion.R....... 57 tests �[0;32mOK�[0m
test_sparseConversion.R....... 58 tests �[0;32mOK�[0m
test_sparseConversion.R....... 58 tests �[0;32mOK�[0m
test_sparseConversion.R....... 58 tests �[0;32mOK�[0m
test_sparseConversion.R....... 58 tests �[0;32mOK�[0m
test_sparseConversion.R....... 59 tests �[0;32mOK�[0m
test_sparseConversion.R....... 59 tests �[0;32mOK�[0m
test_sparseConversion.R....... 59 tests �[0;32mOK�[0m
test_sparseConversion.R....... 59 tests �[0;32mOK�[0m
test_sparseConversion.R....... 59 tests �[0;32mOK�[0m
test_sparseConversion.R....... 59 tests �[0;32mOK�[0m
test_sparseConversion.R....... 60 tests �[0;32mOK�[0m
test_sparseConversion.R....... 60 tests �[0;32mOK�[0m
test_sparseConversion.R....... 60 tests �[0;32mOK�[0m
test_sparseConversion.R....... 60 tests �[0;32mOK�[0m
test_sparseConversion.R....... 60 tests �[0;32mOK�[0m
test_sparseConversion.R....... 60 tests �[0;32mOK�[0m
test_sparseConversion.R....... 60 tests �[0;32mOK�[0m
test_sparseConversion.R....... 61 tests �[0;32mOK�[0m
test_sparseConversion.R....... 61 tests �[0;32mOK�[0m
test_sparseConversion.R....... 61 tests �[0;32mOK�[0m
test_sparseConversion.R....... 61 tests �[0;32mOK�[0m
test_sparseConversion.R....... 61 tests �[0;32mOK�[0m
test_sparseConversion.R....... 61 tests �[0;32mOK�[0m
test_sparseConversion.R....... 61 tests �[0;32mOK�[0m
test_sparseConversion.R....... 62 tests �[0;32mOK�[0m
test_sparseConversion.R....... 62 tests �[0;32mOK�[0m
test_sparseConversion.R....... 62 tests �[0;32mOK�[0m
test_sparseConversion.R....... 62 tests �[0;32mOK�[0m
test_sparseConversion.R....... 63 tests �[0;32mOK�[0m
test_sparseConversion.R....... 63 tests �[0;32mOK�[0m
test_sparseConversion.R....... 63 tests �[0;32mOK�[0m
test_sparseConversion.R....... 63 tests �[0;32mOK�[0m
test_sparseConversion.R....... 63 tests �[0;32mOK�[0m
test_sparseConversion.R....... 63 tests �[0;32mOK�[0m
test_sparseConversion.R....... 64 tests �[0;32mOK�[0m
test_sparseConversion.R....... 64 tests �[0;32mOK�[0m
test_sparseConversion.R....... 64 tests �[0;32mOK�[0m
test_sparseConversion.R....... 65 tests �[0;32mOK�[0m
test_sparseConversion.R....... 65 tests �[0;32mOK�[0m
test_sparseConversion.R....... 65 tests �[0;32mOK�[0m
test_sparseConversion.R....... 66 tests �[0;32mOK�[0m
test_sparseConversion.R....... 66 tests �[0;32mOK�[0m
test_sparseConversion.R....... 66 tests �[0;32mOK�[0m
test_sparseConversion.R....... 67 tests �[0;32mOK�[0m
test_sparseConversion.R....... 67 tests �[0;32mOK�[0m
test_sparseConversion.R....... 67 tests �[0;32mOK�[0m
test_sparseConversion.R....... 67 tests �[0;32mOK�[0m
test_sparseConversion.R....... 68 tests �[0;32mOK�[0m
test_sparseConversion.R....... 68 tests �[0;32mOK�[0m
test_sparseConversion.R....... 68 tests �[0;32mOK�[0m
test_sparseConversion.R....... 68 tests �[0;32mOK�[0m
test_sparseConversion.R....... 68 tests �[0;32mOK�[0m
test_sparseConversion.R....... 68 tests �[0;32mOK�[0m
test_sparseConversion.R....... 69 tests �[0;32mOK�[0m
test_sparseConversion.R....... 69 tests �[0;32mOK�[0m
test_sparseConversion.R....... 69 tests �[0;32mOK�[0m
test_sparseConversion.R....... 70 tests �[0;32mOK�[0m
test_sparseConversion.R....... 70 tests �[0;32mOK�[0m
test_sparseConversion.R....... 70 tests �[0;32mOK�[0m
test_sparseConversion.R....... 70 tests �[0;32mOK�[0m
test_sparseConversion.R....... 70 tests �[0;32mOK�[0m
test_sparseConversion.R....... 71 tests �[0;32mOK�[0m
test_sparseConversion.R....... 71 tests �[0;32mOK�[0m
test_sparseConversion.R....... 71 tests �[0;32mOK�[0m
test_sparseConversion.R....... 71 tests �[0;32mOK�[0m
test_sparseConversion.R....... 71 tests �[0;32mOK�[0m
test_sparseConversion.R....... 72 tests �[0;32mOK�[0m
test_sparseConversion.R....... 72 tests �[0;32mOK�[0m
test_sparseConversion.R....... 72 tests �[0;32mOK�[0m
test_sparseConversion.R....... 72 tests �[0;32mOK�[0m
test_sparseConversion.R....... 72 tests �[0;32mOK�[0m
test_sparseConversion.R....... 72 tests �[0;32mOK�[0m
test_sparseConversion.R....... 73 tests �[0;32mOK�[0m
test_sparseConversion.R....... 73 tests �[0;32mOK�[0m
test_sparseConversion.R....... 73 tests �[0;32mOK�[0m
test_sparseConversion.R....... 73 tests �[0;32mOK�[0m
test_sparseConversion.R....... 73 tests �[0;32mOK�[0m
test_sparseConversion.R....... 73 tests �[0;32mOK�[0m
test_sparseConversion.R....... 74 tests �[0;32mOK�[0m
test_sparseConversion.R....... 74 tests �[0;32mOK�[0m
test_sparseConversion.R....... 74 tests �[0;32mOK�[0m
test_sparseConversion.R....... 74 tests �[0;32mOK�[0m
test_sparseConversion.R....... 74 tests �[0;32mOK�[0m
test_sparseConversion.R....... 74 tests �[0;32mOK�[0m
test_sparseConversion.R....... 75 tests �[0;32mOK�[0m
test_sparseConversion.R....... 75 tests �[0;32mOK�[0m
test_sparseConversion.R....... 75 tests �[0;32mOK�[0m
test_sparseConversion.R....... 75 tests �[0;32mOK�[0m
test_sparseConversion.R....... 75 tests �[0;32mOK�[0m
test_sparseConversion.R....... 75 tests �[0;32mOK�[0m
test_sparseConversion.R....... 75 tests �[0;32mOK�[0m
test_sparseConversion.R....... 76 tests �[0;32mOK�[0m
test_sparseConversion.R....... 76 tests �[0;32mOK�[0m
test_sparseConversion.R....... 76 tests �[0;32mOK�[0m
test_sparseConversion.R....... 77 tests �[0;32mOK�[0m
test_sparseConversion.R....... 77 tests �[0;32mOK�[0m
test_sparseConversion.R....... 77 tests �[0;32mOK�[0m
test_sparseConversion.R....... 77 tests �[0;32mOK�[0m
test_sparseConversion.R....... 78 tests �[0;32mOK�[0m
test_sparseConversion.R....... 78 tests �[0;32mOK�[0m
test_sparseConversion.R....... 78 tests �[0;32mOK�[0m
test_sparseConversion.R....... 78 tests �[0;32mOK�[0m
test_sparseConversion.R....... 79 tests �[0;32mOK�[0m
test_sparseConversion.R....... 79 tests �[0;32mOK�[0m
test_sparseConversion.R....... 79 tests �[0;32mOK�[0m
test_sparseConversion.R....... 79 tests �[0;32mOK�[0m
test_sparseConversion.R....... 80 tests �[0;32mOK�[0m
test_sparseConversion.R....... 80 tests �[0;32mOK�[0m
test_sparseConversion.R....... 80 tests �[0;32mOK�[0m
test_sparseConversion.R....... 81 tests �[0;32mOK�[0m
test_sparseConversion.R....... 81 tests �[0;32mOK�[0m
test_sparseConversion.R....... 81 tests �[0;32mOK�[0m
test_sparseConversion.R....... 82 tests �[0;32mOK�[0m
test_sparseConversion.R....... 82 tests �[0;32mOK�[0m
test_sparseConversion.R....... 82 tests �[0;32mOK�[0m
test_sparseConversion.R....... 83 tests �[0;32mOK�[0m
test_sparseConversion.R....... 83 tests �[0;32mOK�[0m
test_sparseConversion.R....... 83 tests �[0;32mOK�[0m
test_sparseConversion.R....... 84 tests �[0;32mOK�[0m
test_sparseConversion.R....... 84 tests �[0;32mOK�[0m
test_sparseConversion.R....... 84 tests �[0;32mOK�[0m
test_sparseConversion.R....... 84 tests �[0;32mOK�[0m
test_sparseConversion.R....... 84 tests �[0;32mOK�[0m
test_sparseConversion.R....... 85 tests �[0;32mOK�[0m
test_sparseConversion.R....... 85 tests �[0;32mOK�[0m �[0;34m1.3s�[0m
----- FAILED[data]: test_cube.R<44--45>
call| expect_equivalent(cx_fcube_test(cplx_cube), (cplx_cube^2), tolerance = critTol)
diff| Mean relative Mod difference: 1.512537e-07
----- FAILED[data]: test_cube.R<81--82>
call| expect_equivalent(as_cx_fcube(cplx_cube), (cplx_cube^2), tolerance = critTol)
diff| Mean relative Mod difference: 1.512537e-07
Error: 2 out of 314 tests failed
Execution halted
from rcpparmadillo.
eddelbuettel
commented on August 20, 2024
I guess that is a somewhat dated platform?
powerpc-apple-darwin10.8.0 (32-bit)
from rcpparmadillo.
coatless
commented on August 20, 2024
@eddelbuettel this is an old-school mac. powerpc-apple-darwin10.8.0 (32-bit). It's been a long time since I've seen that.
from rcpparmadillo.
eddelbuettel
commented on August 20, 2024
Yes the 32-bit raised an eyebrow, the 10.8 even more. Decade old per https://en.wikipedia.org/wiki/OS_X_Mountain_Lion
No reason for it to fail though.
from rcpparmadillo.
coatless
commented on August 20, 2024
@eddelbuettel afaik macOS support for R 4.2.0 is official on High Sierra and above. The last supported version of R for PowerPC was v2.7.0 (c.f. Previous releases of R for Mac OS X
. For Mountain Lion, the last official build (on Intel) was R 3.2.1. I think it's fair to say a little bit of imprecision is to be expected at this point.
from rcpparmadillo.
eddelbuettel
commented on August 20, 2024
@barracuda156 Can you paste in str(.Machine) and str(.Plaform) ? My i7 has
> str(.Machine)
List of 29
$ double.eps : num 2.22e-16
$ double.neg.eps : num 1.11e-16
$ double.xmin : num 2.23e-308
$ double.xmax : num 1.8e+308
$ double.base : int 2
$ double.digits : int 53
$ double.rounding : int 5
$ double.guard : int 0
$ double.ulp.digits : int -52
$ double.neg.ulp.digits : int -53
$ double.exponent : int 11
$ double.min.exp : int -1022
$ double.max.exp : int 1024
$ integer.max : int 2147483647
$ sizeof.long : int 8
$ sizeof.longlong : int 8
$ sizeof.longdouble : int 16
$ sizeof.pointer : int 8
$ sizeof.time_t : int 8
$ longdouble.eps : num 1.08e-19
$ longdouble.neg.eps : num 5.42e-20
$ longdouble.digits : int 64
$ longdouble.rounding : int 5
$ longdouble.guard : int 0
$ longdouble.ulp.digits : int -63
$ longdouble.neg.ulp.digits: int -64
$ longdouble.exponent : int 15
$ longdouble.min.exp : int -16382
$ longdouble.max.exp : int 16384
> str(.Platform)
List of 8
$ OS.type : chr "unix"
$ file.sep : chr "/"
$ dynlib.ext: chr ".so"
$ GUI : chr "X11"
$ endian : chr "little"
$ pkgType : chr "source"
$ path.sep : chr ":"
$ r_arch : chr ""
> from rcpparmadillo.
barracuda156
commented on August 20, 2024
@coatless @eddelbuettel Yes, R upstream does not support older macOS (perhaps no hardware to test), but the latest R works fine on 10.5+, and we support those systems in Macports.
ppc32 also exists on *BSD, Linux and AIX; I think at least several BSDs support it in their latest OS versions (probably some Linux too).
from rcpparmadillo.
eddelbuettel
commented on August 20, 2024
Yeah I am pretty sure we still build / used to build on these machines to. My current grid is https://buildd.debian.org/status/package.php?p=r-cran-rcpparmadillo and looks pretty green:
But I as maintainer made an executive decision here that is different from many of my fellow Debian maintainers and I do not run CI on these as I find CRAN sufficiently paranoid. So if any one of those machines had a funky 12 1/2 bit FPU I would not know ... based on the CRAN packages alone. The R package itself of course runs the equivalent of configure; make; make check; make install (with a bazillion more options of course).
from rcpparmadillo.
barracuda156
commented on August 20, 2024
@eddelbuettel Here is what I got on a PowerMac (native ppc32):
sergey-fedorovs-power-mac-g5:~ svacchanda$ R
R version 4.2.2 (2022-10-31) -- "Innocent and Trusting"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: powerpc-apple-darwin10.0.0d2 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> str(.Machine)
List of 28
$ double.eps : num 2.22e-16
$ double.neg.eps : num 1.11e-16
$ double.xmin : num 2.23e-308
$ double.xmax : num 1.8e+308
$ double.base : int 2
$ double.digits : int 53
$ double.rounding : int 5
$ double.guard : int 0
$ double.ulp.digits : int -52
$ double.neg.ulp.digits : int -53
$ double.exponent : int 11
$ double.min.exp : int -1022
$ double.max.exp : int 1024
$ integer.max : int 2147483647
$ sizeof.long : int 4
$ sizeof.longlong : int 8
$ sizeof.longdouble : int 16
$ sizeof.pointer : int 4
$ longdouble.eps : num 6.95e-310
$ longdouble.neg.eps : num 6.95e-310
$ longdouble.digits : int 1024
$ longdouble.rounding : int 4
$ longdouble.guard : int 0
$ longdouble.ulp.digits : int -1027
$ longdouble.neg.ulp.digits: int -1027
$ longdouble.exponent : int 7
$ longdouble.min.exp : int -47
$ longdouble.max.exp : int -943
> str(.Platform)
List of 8
$ OS.type : chr "unix"
$ file.sep : chr "/"
$ dynlib.ext: chr ".so"
$ GUI : chr "X11"
$ endian : chr "big"
$ pkgType : chr "source"
$ path.sep : chr ":"
$ r_arch : chr ""
from rcpparmadillo.
barracuda156
commented on August 20, 2024
@eddelbuettel And this in Rosetta (10.6.8 with building for ppc):
macmini:~ svacchanda$ R
R version 4.2.2 (2022-10-31) -- "Innocent and Trusting"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: powerpc-apple-darwin10.8.0 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> str(.Machine)
List of 28
$ double.eps : num 2.22e-16
$ double.neg.eps : num 1.11e-16
$ double.xmin : num 2.23e-308
$ double.xmax : num 1.8e+308
$ double.base : int 2
$ double.digits : int 53
$ double.rounding : int 5
$ double.guard : int 0
$ double.ulp.digits : int -52
$ double.neg.ulp.digits : int -53
$ double.exponent : int 11
$ double.min.exp : int -1022
$ double.max.exp : int 1024
$ integer.max : int 2147483647
$ sizeof.long : int 4
$ sizeof.longlong : int 8
$ sizeof.longdouble : int 16
$ sizeof.pointer : int 4
$ longdouble.eps : num 6.95e-310
$ longdouble.neg.eps : num 6.95e-310
$ longdouble.digits : int 1024
$ longdouble.rounding : int 4
$ longdouble.guard : int 0
$ longdouble.ulp.digits : int -1027
$ longdouble.neg.ulp.digits: int -1027
$ longdouble.exponent : int 7
$ longdouble.min.exp : int -47
$ longdouble.max.exp : int -943
> str(.Platform)
List of 8
$ OS.type : chr "unix"
$ file.sep : chr "/"
$ dynlib.ext: chr ".so"
$ GUI : chr "X11"
$ endian : chr "big"
$ pkgType : chr "source"
$ path.sep : chr ":"
$ r_arch : chr ""
Well, looks identical, but just for the record. (I test on both systems. 10.5.8 only occasionally.)
from rcpparmadillo.
eddelbuettel
commented on August 20, 2024
Hm. Only difference is the shorter long and pointer at four bytes.
from rcpparmadillo.
barracuda156
commented on August 20, 2024
Hm. Only difference is the shorter
longandpointerat four bytes.
Perhaps irrelevant to the case, but other difference is that on ppc32 bool is 4 bytes.
from rcpparmadillo.
barracuda156
commented on August 20, 2024
@eddelbuettel If I can assist in any way to find a fix for this, please let me know. RcppArmadillo is an important port and a dependency for some other very important ones.
from rcpparmadillo.
eddelbuettel
commented on August 20, 2024
As your log showed, this failed in two tests in one file, both using a particular equality threshold. If we look even more closely we see that that threshold is already lowere for Windoze so maybe we just need to reflect your situation.
Please try this diff:
modified inst/tinytest/test_cube.R
@@ -24,7 +24,7 @@ library(RcppArmadillo)
Rcpp::sourceCpp("cpp/cube.cpp")
.onWindows <- .Platform$OS.type == "windows"
-critTol <- if (.onWindows) 1.0e-6 else 1.5e-7
+critTol <- if (.onWindows || .Machine$sizeof.long == 4) 1.0e-6 else 1.5e-7
## test arrays
dbl_cube <- array(1.5:27.5, rep(3, 3))from rcpparmadillo.
barracuda156
commented on August 20, 2024
@eddelbuettel Thank you! I have an update: it seems that my fix to malloc problem resulted in better tests:
---> Testing R-RcppArmadillo
* using log directory ‘/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_R_R-RcppArmadillo/R-RcppArmadillo/work/RcppArmadillo/RcppArmadillo.Rcheck’
* using R version 4.2.2 (2022-10-31)
* using platform: powerpc-apple-darwin10.0.0d2 (32-bit)
* using session charset: UTF-8
* checking for file ‘RcppArmadillo/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RcppArmadillo’ version ‘0.11.4.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RcppArmadillo’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 7.3Mb
sub-directories of 1Mb or more:
include 6.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘tinytest.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘RcppArmadillo-intro.Rnw’ using ‘UTF-8’... OK
‘RcppArmadillo-sparseMatrix.Rnw’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
All ok, 314 results (7m 37.2s)
from rcpparmadillo.
eddelbuettel
commented on August 20, 2024
nanotime next?
from rcpparmadillo.
nunotexbsd
commented on August 20, 2024
As your log showed, this failed in two tests in one file, both using a particular equality threshold. If we look even more closely we see that that threshold is already lowere for Windoze so maybe we just need to reflect your situation.
Please try this diff:
modified inst/tinytest/test_cube.R @@ -24,7 +24,7 @@ library(RcppArmadillo) Rcpp::sourceCpp("cpp/cube.cpp") .onWindows <- .Platform$OS.type == "windows" -critTol <- if (.onWindows) 1.0e-6 else 1.5e-7 +critTol <- if (.onWindows || .Machine$sizeof.long == 4) 1.0e-6 else 1.5e-7 ## test arrays dbl_cube <- array(1.5:27.5, rep(3, 3))
Hello,
Same exacly error on FreeBSD fixed with a dirty change:
--- inst/tinytest/test_cube.R.orig 2023-02-19 18:01:50 UTC
+++ inst/tinytest/test_cube.R
@@ -23,8 +23,9 @@ Rcpp::sourceCpp("cpp/cube.cpp")
Rcpp::sourceCpp("cpp/cube.cpp")
-.onWindows <- .Platform$OS.type == "windows"
-critTol <- if (.onWindows) 1.0e-6 else 1.5e-7
+#.onWindows <- .Platform$OS.type == "windows"
+#critTol <- if (.onWindows || .Machine$sizeof.long == 4) 1.0e-6 else 1.5e-7
+critTol <- 1.0e-6
## test arrays
dbl_cube <- array(1.5:27.5, rep(3, 3))Is there a better way to fix?
R on FreeBSD reports:
> .Machine$sizeof.long
[1] 8
Thanks
from rcpparmadillo.
eddelbuettel
commented on August 20, 2024
You may be able to use Sys.info()[["machine"]] instead.
from rcpparmadillo.
nunotexbsd
commented on August 20, 2024
> Sys.info()[["machine"]]
[1] "amd64"
Something like:
critTol <- if (.onWindows || Sys.info()[["machine"]] == "amd64") 1.0e-6 else 1.5e-7?
from rcpparmadillo.
eddelbuettel
commented on August 20, 2024
Maybe utils::osVersion ? In any event, you may want to keep a local patch file around if your behavior differs. This is first and foremost a CRAN package and we are good there under all tests including 'long double' and whatnot. Your error may also come from your BLAS/LAPACK side (I have not looked at the test in a while).
from rcpparmadillo.
barracuda156
commented on August 20, 2024
@nunotexbsd If you come up with an upstreamable patch, please make it OS-agnostic, since we would want this to work correctly on other systems which run on ppc as well (Darwin, OpenBSD, NetBSD).
from rcpparmadillo.
nunotexbsd
commented on August 20, 2024
On my systems I've noted that long is:
amd64 .Machine$sizeof.long == 8
i386 .Machine$sizeof.long == 4
aarch64 .Machine$sizeof.long == 8
armv7 .Machine$sizeof.long == 4
amd64/aarch64: Tier 1
i386/armv7: Tier 2
and according to https://stat.ethz.ch/R-manual/R-devel/library/base/html/zMachine.html:
sizeof.long
the number of bytes in a C ‘long’ type: 4 or 8 (most 64-bit systems, but not Windows).
Anyway, I decided to commit port update with patch as a start:
.onWindows <- .Platform$OS.type == "windows"
-critTol <- if (.onWindows) 1.0e-6 else 1.5e-7
+critTol <- if (.onWindows || .Machine$sizeof.long == 4 || .Machine$sizeof.long == 8) 1.0e-6 else 1.5e-7to match FreeBSD arches and fix tests.
( https://cgit.freebsd.org/ports/commit/?id=89e4a1f2c1d1997b8414e2e648c7b4b7c829b63e )
It was nice that a global check is done here to all supported systems but it is ok too to fix it with patch in our ports.
Open to sugestions :)
Thanks
from rcpparmadillo.
barracuda156
commented on August 20, 2024
@nunotexbsd If the fix is not meant for the upstream, you could just apply the patch to the threshold conditionally on the arch.
from rcpparmadillo.
nunotexbsd
commented on August 20, 2024
In case upstream would fix it globally, patch provided is to indicate that FreeBSD is fixed that way.
We could use condition based on OS name like "FreeBSD". I don't know what are the values for other OSes.
from rcpparmadillo.
barracuda156
commented on August 20, 2024
In case upstream would fix it globally, patch provided is to indicate that FreeBSD is fixed that way. We could use condition based on OS name like "FreeBSD". I don't know what are the values for other OSes.
If by condition you mean in the source code, then for macOS it is __APPLE__, and specifically for PowerPC 32-bit it is __ppc__ (spelled exactly this way).
So, for example, to have a specific code for ppc32 on macOS, this can be used:
#if defined(__APPLE__) && defined(__ppc__)
. . .
#endif
I do not know what conditions are used in FreeBSD makefiles in ports.
from rcpparmadillo.
eddelbuettel
commented on August 20, 2024
@nunotexbsd One well-known repo for #define statements is https://sourceforge.net/p/predef/wiki/Home/ -- and under https://sourceforge.net/p/predef/wiki/OperatingSystems/ it has entries for the BSD group and FreeBSD.
from rcpparmadillo.
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- using namespace arma; HOT 1
- Issue on call by reference with a NA matrix HOT 1
- Update indMatrix->arma::SpMat and pMatrix->arma::SpMat for Matrix 1.5-5 HOT 2
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- Failed to install RcppArmadillo on Linux Hyper Cluster HOT 4
- compilation on fedora39 raise error: cannot run C++ compiled programs HOT 6
- Install issue HOT 10
- Platform dependent output for sample()? HOT 9
- RcppArmadillo not available for R 4.3.2 + compilation errors HOT 14
- arma::randu incorrect output HOT 14
- Remove stale C++11 compilation standard setter in plugin HOT 1
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