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Name: REFRESH Bioinformatics Group
Type: Organization
REFRESH Bioinformatics Group's Projects
agc
Assembled Genomes Compressor
clusty
colord
A versatile compressor of third generation sequencing reads.
comsa
Compressor of multiple sequence alignments data
dsrc
DSRC - DNA Sequence Reads Compressor
famsa
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
fastore
FaStore - high-performance FASTQ files compressor
fqsqueezer
FQSqueezer - FASTQ compressor based on k-mer statistics
gdc2
Genome Differential Compressor 2
gtc
GenoTypes Compressor
gtshark
GTShark: Genotype compression in large projects
kmc
Fast and frugal disk based k-mer counter
kmer-db
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
lz-ani
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
mugi
Multiple Genome Index
orcom
Overlapping Reads COmpression with Minimizers
phist
Phage-Host Interaction Search Tool
protestar
Protein Structure Archiver
quickprobs
Accurate algorithm for the multiple sequence alignment.
raduls
Ultra fast MSD radix sorter
reckoner
ref-utils
splash
tgc
Thousands Genome Compressor
vcfshark
vclust
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
whisper
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