Rob Elshire's Projects
AftrRAD is a bioinformatic pipeline for analyzing GBS data such as those generated with RADseq.
Rapid competitive read demulitplexer. Made with tries.
Programme, notes, slides etc. related to BBS meeting prior to MapNet2015
a bash pipeline for RAD sequencing
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
Code for working with epiGBS data
Scripts to pre-process Genotyping-by-Sequencing data (GBS) before analysis with STACKS.
Barcoded adapter generation code
Trim GBS reads of adaptors and reduce over-inflation of allele counts.
GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments
Wayback Machine archive.org support for Known
Python based web front end to the moosic daemon.