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academicodataanalysis

Análisis de datos para clubes de ciencia

aerial

Apple TV Aerial Screensaver for Mac

aeron15.github.io

analysis_data_create_figure

Analysis of data to create figures for paper on phenotypic variation

argyle

An R package for import, QC and analysis of Illumina Infinium genotyping arrays

atac-seq

ATAC-seq tools developed by Fred P. Davis

autoencoder_ipython_fork

Ipython notebook for blog post entry

bamutil_fork

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bedr

bedtools2

A powerful toolset for genome arithmetic.

bi-transcription

bidrectional transcription scripts

blast_genes_and_count_haplotypes

Get sequences of Fay strains by blasting and merges it with Liti sequences

bookdown-demo-fork

A minimal book example using bookdown

bookdown-minimal-fork

An absolutely minimal bookdown example

boxplotr.shiny

shiny application to generate box plots with R

centipede.tutorial

:bug: How to use CENTIPEDE to determine if a transcription factor is bound.

chemical_vae

Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow

chip-seq_preprocess

A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.

chippeakanno

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ChIPpeakAnno.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ChIPpeakAnno.

chipseq-compare

Comparison of differential chip seq methods and rewriting/porting code along the way.

clustergrammer

Create a clustergram visualization from a user defined network in tsv format.

clustergrammer-1

An interactive heatmap visualization built using D3.js

courses

Courses

creative-commons-markdown

Markdown-formatted Creative Commons licenses

custom-iterm-applescripts-for-alfred

Custom iTerm Applescripts for Alfred

d-gex

Deep learning for gene expression inference

data

Data and code behind the stories and interactives at FiveThirtyEight

data-integration-neurolincs

data-testing-tutorial

A short tutorial on how to do data testing.