Comments (3)
Would you run the example file to check. I just added an example file to the tutorial. I will soon add a full example with tutorials and more explanations. If you still get an error give me some time and I will fix it. I have been a bit busy but soon will debug more VDJ parts of the tool.
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Sorry for late reply.
In tutorial, I just found the example file with gene expression data.
Where is VDJ data in tutorial?
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First update iCellR to version 1.5.8. It's not in CRAN yet so update from GitHub.
Then add your VDJ data to iCellR object
my.obj <- add.vdj(my.obj, vdj.data = my.vdj.data)
The rest is explained in detail in the updated section for plotting "How to plot clonotypes".
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Related Issues (20)
- Error: cannot allocate vector of size 6288.3 Gb HOT 1
- convert seurat object to iCellR object HOT 3
- Ploting colonotypes HOT 4
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- TPM instead of count data & no conditions HOT 2
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- conds.to.plot in gene.plot not functional
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- Transform my seurat object into iCellR HOT 5
- Can I integrate data with iCellR? HOT 4
- Method for gene-gene correlations HOT 2
- How to normalize data with single condition? HOT 1
- 'replacement has 1 row, data has 0' when creating iCellR object HOT 3
- Transform my iCellR object into seurat? HOT 1
- no plots available for ADT data when using ADT + HTO
- Seeking help to create different types of plots HOT 3
- gg.cor produces incorrect plots
- can not using the iCellR ni rstudio when the plot setting the interactive =T
- data.scale question HOT 2
- an error message - running the run.knetl HOT 1
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