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rietho avatar rietho commented on September 28, 2024

Hi @adelabriere! Unfortunately IPO us currently unsupported and I have very limited capacity to support.

However, I did look briefly into your error. I am assuming that the error is caused from a call to xcms::xcmsSet, namely from here. Here, file.info() is called on the files provided. I do assume, that one of your files provided is not pointing to an actual file. You might try to file.exists(files) on your files to check.

I hope this helps.

from ipo.

adelabriere avatar adelabriere commented on September 28, 2024

Hi @rietho , thanks for taking the time to answer.

Sadly this can t be the issue as my file are listed directly from a directory, I tried to process them using XCMS and it worked. All files exists and are readable. Moreover this error occurs at the 25th point of the design, and it successfully processed the 24 first, meaning that it is not a file issue.

I did not find a workaround at the moment. I m trying to rerun it with a single core on the cluster to see if it solves the issues.

Best,
Alexis

from ipo.

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