rkabiljo Goto Github PK
Name: Renata Kabiljo
Type: User
Company: King's College London
Location: London
Name: Renata Kabiljo
Type: User
Company: King's College London
Location: London
this performs differential expression of genes and ERVs together, but normalised according to genes only
Pipeline running STEAK preprocessing and post processing for detection of HERVK
Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
analyse Salmon results
prepare index files for Salmon
performs RNAseq analysis, starting from fast reads, quantifies genes and ERVs and performs differential expression
run salmon as a snakemake pipeline, on create
selects controls for given cases - e.g. non carriers vs carriers of a variant
shuffle labels of cases / controls to assess whether pValues are due to chance
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