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avrbst

Statistical analysis of bacterial dispersal in R

bactdating

Bayesian inference of ancestral dates on bacterial phylogenetic trees

basicbioinformatics

This repo has files and instructions used for the "Basic Bioinformatics and command-line tools for phytopathologists" organized during Plant Health 2020. Unlike the official repo, this repo is constantly being updated.

blast2fasta.sh

Shell script to convert blast XML output (`-outfmt 5`) into FASTA or multiFASTA format.

custom-themes

Custom themes for Files

customprompts

Custom prompts in multiple console environments

deep_learning

drift

ecology-workshop

Ecology Workshop Overview

eff-search

geranium_project_2022

gganimate

A Grammar of Animated Graphics

ios-akarsh-seggemu-resume

iOS resume application that follows schema of https://jsonresume.org/ to parse the JSON resume file and shows the resume in an iOS application

joneslab

lesson-example

Example lesson using The Carpentries lesson template.

mediumpress

A WordPress Theme Inspired by Medium.com

ngs-bsa

Pipeline for the Next Gen Sequencing Bulked Sequence Analysis pipeline

nursery-dispersal

Code for https://doi.org/10.1094/pdis-05-20-0945-re

oh-my-posh

A prompt theming engine for Powershell

organization-genomics

Project Organization and Management for Genomics

prok-snptree

pseudomonas-16s

pyani

Application and Python module for average nucleotide identity analyses of microbes.

python-ecology-lesson

Data Analysis and Visualization in Python for Ecologists

qtlseqr

QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

rknx.github.io

rnaseq

Pipeline for parallelized RNA-seq analysis

rnaseq-cuffinks

Scripts for files used in rnaseq analysis project

slurm

Slurm: A Highly Scalable Workload Manager

socialsci-workshop

Social Science Workshop Overview