romainguiet's Projects
Bitmap morphometry of neuronal arbors through Sholl
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
BIOPLib
Documentation sur l'utilisation des imprimantes 3D au Fablab Fribourg
EasyXT is an extension for Imaris
An OMERO.web app for creating Figures from images in OMERO
The ImageJ wiki
Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/
Collection of mathematical morphology methods and plugins for ImageJ
Fiji module for image transformation and related algorithms
Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling
Feature extraction for labeled objects in images using regionprops from scikit-image
NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
Omnipose: a high-precision solution for morphology-independent cell segmentation
Maven project to easily connect to OMERO.
StarDist - Object Detection with Star-convex Shapes
Website for the SwissBIAS network: Swiss BioImage Analysts's network
Time arrow prediction for live-cell microscopy
Resources for teaching/preparing to teach bioimage analysis