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asa

Bitmap morphometry of neuronal arbors through Sholl

bioimageanalysisnotebooks

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

biop-dataset

bioplib

BIOPLib

cell_counter

cookie_cutter_imagej

csbdeep_fiji

documentation-imprimante-3d

Documentation sur l'utilisation des imprimantes 3D au Fablab Fribourg

easyxt

EasyXT is an extension for Imaris

fablab-web

figure

An OMERO.web app for creating Figures from images in OMERO

image-to-crosslines

imagej.github.io

The ImageJ wiki

inkscape

microscopy-icons

Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/

morpholibj

Collection of mathematical morphology methods and plugins for ImageJ

mpicbg

Fiji module for image transformation and related algorithms

multi_padlock_design

Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling

napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

neubias_academy_biapy

NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter

omero-imagej-scripts

omero_macro-extensions

omnipose

Omnipose: a high-precision solution for morphology-independent cell segmentation

reproducible_bioimage_analysis

simple-omero-client

Maven project to easily connect to OMERO.

stardist

StarDist - Object Detection with Star-convex Shapes

swissbias.github.io

Website for the SwissBIAS network: Swiss BioImage Analysts's network

tarrow

Time arrow prediction for live-cell microscopy

training-resources

Resources for teaching/preparing to teach bioimage analysis