Comments (3)
The species_ID in my copy of the MATSS data does not match the species_id in BBS data I downloaded from the retriever this year, nor does it match the AOU.
This strikes me as problem for both birdsize and for downstream analyses.
from birdsize.
If you pull the $metadata$species_table from a MATSS object there is a column for id and for species_id, one of these may match the AOU or species_id columns from the retriever.
Then it may also be possible to stitch together which "id"ish column from MATSS data corresponds to species_id in raw_masses, and from there re-connect the retriever data with raw_masses.
from birdsize.
See #41 and the add_aou branch.
The id
column in MATSS-derived data corresponds to the BBS AOU identifier with "sp" pasted onto the front. I updated the raw_masses
and sd_table
datasets to include the BBS AOU, and updated the functions to use the BBS AOU as the species id. (The species_id
column in MATSS is not good for interfacing with the BBS data as it comes directly from the retriever).
from birdsize.
Related Issues (20)
- pkgcheck results - community_data HOT 16
- accessing species table from bbs data releases HOT 1
- citations HOT 3
- synthetic route rather than new hartford HOT 2
- fxns to parse bbs data --> expected format HOT 2
- Next steps
- birdsize ROpenSci review
- birdsize methods/software note paper HOT 1
- Fxns to document better
- Planned vignettes
- Meta stuff
- ROpenSci template
- Housecleaning
- ROpenSci draft submission
- ROpenSci can do simultaneous submission to MEE
- Reviewer comments and to-do's
- Revisions to-do
- To resubmit
- AOU link
- Redirect isn't working yet
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from birdsize.