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diazrenata avatar diazrenata commented on August 24, 2024

The species_ID in my copy of the MATSS data does not match the species_id in BBS data I downloaded from the retriever this year, nor does it match the AOU.

This strikes me as problem for both birdsize and for downstream analyses.

from birdsize.

diazrenata avatar diazrenata commented on August 24, 2024

If you pull the $metadata$species_table from a MATSS object there is a column for id and for species_id, one of these may match the AOU or species_id columns from the retriever.

Then it may also be possible to stitch together which "id"ish column from MATSS data corresponds to species_id in raw_masses, and from there re-connect the retriever data with raw_masses.

from birdsize.

diazrenata avatar diazrenata commented on August 24, 2024

See #41 and the add_aou branch.

The id column in MATSS-derived data corresponds to the BBS AOU identifier with "sp" pasted onto the front. I updated the raw_masses and sd_table datasets to include the BBS AOU, and updated the functions to use the BBS AOU as the species id. (The species_id column in MATSS is not good for interfacing with the BBS data as it comes directly from the retriever).

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