Comments (1)
populations, communities, species...individuals
I hesitate to make these classes, but for function naming at least:
User facing functions
- species (could use
sp_*
but there's the wholesp
lexicon):- get parameters (
species_define
) is a wrapper for
- lookup parameters (species_lookup
)
- estimate parameters (species_estimate
)
- get parameters (
- populations
- the core fxionality of this package is to generate population-wide size estimates (
pop_generate
) - combining over populations gets you to community estimates? (
pop_combine
)
- the core fxionality of this package is to generate population-wide size estimates (
- communities
- fxns not implemented yet
- but, iterate over species to simulate populations
- fxns to operate on communities should apply naturally to BBS survey routes as imported using
rdataretriever
- clean data following BBS norms (
comm_clean
) - generate population estimates for a community (
comm_generate
) - generate state variable tallies for a community (
comm_summarize
)
estimate_bmr
I feel like should be user-facing, but it's kind of free-floating (technically it applies to individuals)
Under-the-hood functions
- Stuff to calculate the scaling relationship - included for reproducibility/transparency
- Lookup/estimate utilities
ind_draw
: actual random number generator that works on individuals; not user-facingind_energy
: could use this so thatestimate_b
fits convention but that's getting pretty fine
from birdsize.
Related Issues (20)
- pkgcheck results - community_data HOT 16
- accessing species table from bbs data releases HOT 1
- citations HOT 3
- synthetic route rather than new hartford HOT 2
- fxns to parse bbs data --> expected format HOT 2
- Next steps
- birdsize ROpenSci review
- birdsize methods/software note paper HOT 1
- Fxns to document better
- Planned vignettes
- Meta stuff
- ROpenSci template
- Housecleaning
- ROpenSci draft submission
- ROpenSci can do simultaneous submission to MEE
- Reviewer comments and to-do's
- Revisions to-do
- To resubmit
- AOU link
- Redirect isn't working yet
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from birdsize.