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diazrenata avatar diazrenata commented on June 16, 2024

populations, communities, species...individuals

I hesitate to make these classes, but for function naming at least:

User facing functions

  • species (could use sp_* but there's the whole sp lexicon):
    • get parameters (species_define) is a wrapper for
      - lookup parameters (species_lookup)
      - estimate parameters (species_estimate)
  • populations
    • the core fxionality of this package is to generate population-wide size estimates (pop_generate)
    • combining over populations gets you to community estimates? (pop_combine)
  • communities
    • fxns not implemented yet
    • but, iterate over species to simulate populations
    • fxns to operate on communities should apply naturally to BBS survey routes as imported using rdataretriever
    • clean data following BBS norms (comm_clean)
    • generate population estimates for a community (comm_generate)
    • generate state variable tallies for a community (comm_summarize)
  • estimate_bmr I feel like should be user-facing, but it's kind of free-floating (technically it applies to individuals)

Under-the-hood functions

  • Stuff to calculate the scaling relationship - included for reproducibility/transparency
  • Lookup/estimate utilities
  • ind_draw: actual random number generator that works on individuals; not user-facing
  • ind_energy: could use this so that estimate_b fits convention but that's getting pretty fine

from birdsize.

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