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raymondben avatar raymondben commented on June 17, 2024

wait will probably help, but at a guess it'll still happen. It looks like it might be intermittent network flakiness that eventually manifests itself because there are so many files. Maybe need to add a retries parm ...

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mdsumner avatar mdsumner commented on June 17, 2024

ok that's helpful, I actually ran the whole read every file from URL, and only a handful of fails - but not sure if they were my out of date list (with preliminary ones) or the network.

the cool thing with slurm + parallel mcmapply is it automatically has a try/catch in it so you get most of the results

is there any problem with bowerbird just giving up on a file rather than failing ?

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mdsumner avatar mdsumner commented on June 17, 2024

it's still going with wait = 10, seems ok!!

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