Comments (2)
DomBennett
commented on July 21, 2024
Hi,
Sorry for the delay. This seems to be the same issue other people are having with windows. I've investigated and it appears to be due to differences in quotations in the arguments for blastn. I have updated the code to account for this OS difference.
I've run your same code on a windows machine and the pipeline completed without error.
Please try reinstalling phylotaR with the latest dev version and try again. You can reinstall phylotaR by running devtools::install_github('AntonelliLab/phylotaR') again.
If the error persists, please let me know.
Best,
Dom
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DomBennett
commented on July 21, 2024
Closing due to inactivity.
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Related Issues (20)
- problem with the restez/phylota integration
- Possibility to supply NCBI API key when running pipeline to access NCBI data faster? HOT 1
- Use phylotaR for retrieving orthologous protein sequences HOT 1
- No periods or tildes in file paths HOT 3
- Multiple markers/loci per cluster issue HOT 4
- Can not install the package in windows HOT 2
- Clusters with different parent number but the same MAD, seed, length, n_taxa, n_seqs
- Description - not enough information
- New Maintainer Wanted HOT 5
- Next release HOT 6
- CRAN archive of package outsider
- Fix pkgdown configuration for reference HOT 3
- No need for restez_connect() HOT 1
- Remove treeman as a dependency? HOT 2
- Could get something new from https://github.com/pachterlab/gget
- test failure HOT 1
- Generating taxonomic dictionary error HOT 1
- Fetch and error seem to be stuck HOT 2
- drop taxa functionality HOT 1
- Identical clusters making it into alignments HOT 1
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