Comments (3)
nylander
commented on July 20, 2024
Should of course be taken care of. Meanwhile, this seems to work (on R 3.4.4, Linux):
library(devtools)
devtools::install_github('dombennett/treeman')
devtools::install_github(repo='ropensci/phylotaR', build_vignettes=TRUE)from phylotar.
jeroen
commented on July 20, 2024
This is still unavailable. I know you can make it work with install_github, however we cannot build binary packages for phylotaR if there are hard dependencies that are not in ropensci or cran.
Would it be an option to move treeman to suggests?
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DomBennett
commented on July 20, 2024
Hmmm... I think there's some core functionality that depends on treeman.
Currently, re-doubling my efforts to get treeman back on CRAN.
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Related Issues (20)
- problem with the restez/phylota integration
- Possibility to supply NCBI API key when running pipeline to access NCBI data faster? HOT 1
- Use phylotaR for retrieving orthologous protein sequences HOT 1
- No periods or tildes in file paths HOT 3
- Multiple markers/loci per cluster issue HOT 4
- Can not install the package in windows HOT 2
- Clusters with different parent number but the same MAD, seed, length, n_taxa, n_seqs
- Description - not enough information
- New Maintainer Wanted HOT 5
- Next release HOT 6
- CRAN archive of package outsider
- Fix pkgdown configuration for reference HOT 3
- No need for restez_connect() HOT 1
- Remove treeman as a dependency? HOT 2
- Could get something new from https://github.com/pachterlab/gget
- test failure HOT 1
- Generating taxonomic dictionary error HOT 1
- Fetch and error seem to be stuck HOT 2
- drop taxa functionality HOT 1
- Identical clusters making it into alignments HOT 1
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