Comments (4)
Having the same problem as well!
from rfishbase.
sorry of the slow reply, having trouble reproducing this. Please ensure your system is up to date, in particular, your authority certificates? (On linux systems this is usually something like apt-get install ca-certificates
, but not sure on the Mac, probably part of the standard OS update though...)
from rfishbase.
Hi. I used rfishbase a few months ago with no issues. However, I am now trying to use it again and somehow the package is not working on my system. The below error shows up when trying to run any command. Any idea on how to solve it? Thanks.
validate_names("Abramites ternetzi")
Error in rbind(deparse.level, ...) :
numbers of columns of arguments do not match
In addition: Warning messages:
1: Error in curl::curl_fetch_memory(file, handle): SSL certificate problem: certificate has expired
2: Error in curl::curl_fetch_memory(file, handle): SSL certificate problem: certificate has expired
3: Error in curl::curl_fetch_memory(file, handle): SSL certificate problem: certificate has expired
4: Error in curl::curl_fetch_memory(file, handle): SSL certificate problem: certificate has expired
5: In curl::curl_fetch_memory(url, handle = handle) :
SSL certificate problem: certificate has expired
6: In curl::curl_fetch_memory(url, handle = handle) :
SSL certificate problem: certificate has expiredSession Info
I also had this problem, and I used this solution in terminal:
ropensci-archive/rbhl#28 (comment)
Some months ago I had the same issue with taxize, then today I had the same problem with rfishbase after updating R. I've used this solution on 3 different computers each using a different OSX version.
It is a hard to replicate problem, has more to do with stuff in terminal than any given R package.
from rfishbase.
Thanks @Lithobius for linking that solution for Mac!
from rfishbase.
Related Issues (20)
- rfishbase length-weight function doesn't work anymore HOT 7
- species() returns mostly NAs HOT 2
- Error in rbind(deparse.level, ...) : 变量的列数不对 In addition: Warning message: In curl::curl_fetch_memory(url, handle = handle) : Timeout was reached: [cn.dataone.org] SSL/TLS connection timeout HOT 4
- Function 'brains' returns the same 17 values independent of taxon HOT 1
- can not install the package HOT 1
- Can't retrieve any table from sealifebase - [Error in error(paste("Some ids failed to resolve")): could not find function "error"] HOT 10
- Estimate() function returning incomplete table HOT 2
- error due to R update HOT 2
- cannot execute estimate function HOT 3
- issues with validate_names HOT 8
- > e = ecosystem("Upeneus tragula") Error in curl::curl_download(file, tempfile()) : Could not resolve host: raw.githubusercontent.com
- Error in curl::curl_download(file, tempfile()) : Empty reply from server
- `Species` entry from `load_data` contains `Genus + species` HOT 1
- Inconsistent validate_names() & species() output for a specific species HOT 2
- Bayesian LW conversion parameter estimates
- Wrong morphometrics values? HOT 2
- Could not find function list_fields() HOT 1
- rfishbasee::fishbase not exported HOT 2
- common_to_sci for other languages HOT 1
- distribution function retuning this error HOT 4
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from rfishbase.