Comments (2)
neurolabusc
commented on September 26, 2024
@ClimbMount This is outside my expertise. I developed dcm2niix for brain imaging studies. Likewise, the NIfTI format has a lot of assumptions that make it simple and popular for brain imaging (e.g. equidistant slices) but not ideal for all medical imaging applications. Usually, moco (motion correction) warnings suggest volumes are changing position/orientation across your volumes, something that the NIfTI format can not handle. I would think the Siemens Research Collaboration Manager associated with the instrument that acquired this will be your best contact. It is their role to help you understand, tune and convert datasets. If you do work out good solutions, feel free to share them with the community.
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neurolabusc
commented on September 26, 2024
Closing as this is outside my expertise and I can not replicate. Feel free to send a sample dataset to my institutional email if you need further advice.
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