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amazon-genomics-cli

autothresholdr

An R port of the "Auto Threshold" plugin for ImageJ for thresholding images.

batchmix

Semi-supervised and unsupervised Bayesian mixture models that simultaneously infer the cluster/class structure and a batch correction. Densities available are the multivariate normal and the multivariate t. The model sampler is implemented in C++. This package is aimed at analysis of low-dimensional data generated across several batches. See [Colem

bernie

blog

Github repo that netlify uses for

brownded

Simulate bounded Brownian motion.

checkmate

Fast and versatile argument checks

detrendr

An R package for detrending images.

dev_guide

rOpenSci Packages: Development, Maintenance, and Peer Review

devtools

Tools to make an R developer's life easier

dplyr

dplyr: A grammar of data manipulation

exampletestr

An R package for help with writing unit tests based on examples in documentation. Slightly similar to python's doctests.

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

filesstrings

A set of operations for manipulating strings in R, built on top of the stringr package and inspired by my struggles in trying to sensibly rename microscopy images.

genbioconductor

Materials for Genomics Data Science: Introduction to Bioconductor

ij_detrendr

An ImageJ2 plugin for detrending images.

interop

C++ Library to parse Illumina InterOp files

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nandb

An R package for performing number and brightness analysis.

nextflow

A DSL for data-driven computational pipelines

pak

A fresh approach to package installation

parsnip

A tidy unified interface to models

phdthesis

My PhD thesis.

pkgdepends

R Package Dependency Resolution

purrr

A functional programming toolkit for R

r-internals

Documentation for R's internal C API

rcppthread

R-friendly threading in C++

recipes

A preprocessing engine to generate design matrices

rmariadb

An R interface to MariaDB

roaddeaths

Probability of dying from a road accident in different countries