Jingqin Rosy Luo's Projects
From SNP and structural variant calling to GWAS.
Jupyter notebook for the basis profile curves
selective inference in Exploratory Data Analysis (Double Dipping)
A Python Package providing two algorithms, DAME and FLAME, for fast and interpretable treatment-control matches of categorical data
Single RNA-seq data analysis with R (Finland, May, 2019)
This repository contains HCA Benchmarking codes
hctsa tutorial using the five-class Bonn EEG dataset
Shiny app for benchmarking and visualization of penalized Cox models
beginner start
the new version of LUCID
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
R interface to REDCap (http://www.project-redcap.org/)
Peer Assessment 1 for Reproducible Research
A repository for setting up a RNAseq workflow
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Config files for my GitHub profile.
Analysis of single cell RNA-seq data course
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
spatially resolved data analysis
multi-view integration