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association

Finding association between clinical, pathological and molecular features

bioconductor-genomicdatacommons

Genomic Data Commons Query

clicktube

Youtube video discovery system

data-analysis-and-visualisation

Data Analysis and Visualisation

gaussian-mixture-modelling

Gaussian mixture modelling - Unsupervised learning

geneexpressionclassification

NanoString classifier based on NGS training set

genomeanalysistoolkit

Genome Analysis Toolkit

icst

ICST: Immune-based Classification of Solid Tumours

immunogenomics

The Immunogenomics Data Analysis

mimic

Minimal methylation classifier (MIMIC): A novel method for derivation and rapid diagnostic detection of disease-associated DNA methylation signatures - We describe the development and validation of minimal methylation classifier (MIMIC), combining CpG signature design from genome-wide datasets, multiplex-PCR and detection by single-base extension and MALDI-TOF mass spectrometry, in a novel method to assess multi-locus DNA methylation profiles within routine clinically-applicable assays.

mutect1

nimble

NanostrIng MB cLassifiEr

nsclc

Development and validation of a robust RNA-seq based prognostic signature in non-small cell lung cancer

omics

Useful 'Omics' tools which you may need to know when doing bioinformatics

programming_tips

R Programming Tips and more

shiny-server

shiny-server main code

survivalanalysis

Survival modelling using Cox proportional hazard regression model

xhmm

eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data