Name: Ruben Chazarra-Gil
Type: User
Company: Barcelons Supercomputing Centre
Bio: PhD Student at the Transcriptomics and Functional Genomics Lab at Barcelona Supercomputing Centre (BSC-CNS)
Twitter: rubenchazarrag
Location: Barcelona,Spain
I'm a bioinformatician and biotechologist currently performing my PhD in transcriptomics data analysis and tool development in the at the
.
Experienced in next generation sequencing (NGS) data analysis, workflow development, statistical analysis and high-performance computing.
single-cell RNA-seq transcriptomics multi-omics
splicing pipeline development
2022-retreat-hackathon
This is the repo for the Mele Lab 2022 Retreat Mini Hackathon
2023-04-scidh-dimensionality-reduction
Repo on the 2023-04 Single-cell in da House Session on Dimensionality Reduction
cell-types-eval-control-workflow
Including dataset cross validation step in workflow
cellphonedb
cellxgenecsci
Deploy CellxGene app in Heroku
notebooks
A Docker image for Cellgeni JupyterHub installation
rubenchazarra
My personal repo
sarek-nf-core
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
scidh-2023-05-quest-for-normalization
Single-cell in da House Session 2. Xavier Soler presenting on Single-cell CUT&TagPRO data normalization strategies
spliz-nf
Nextflow implementation of SpliZ
spliz_pipeline
Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
sqtlseeker2-nf
An automated sQTL mapping pipeline using Nextflow
transcript-protein-domain-mapper
Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
utils
This is a collection of useful pieces of code I am generating during my PhD at BSC
wg1-pipeline-qc-ruben
Part of the sc-eQTLgen consortium pipeline. Step 1, where the QC is done.
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
