ruby-luo-0309 Goto Github PK

blacklist

Application for making ENCODE Blacklists

centralized-workflow-exercise

cut-runtools-2.0

CUT&RUN and CUT&Tag data processing and analysis

cutandtag

Analysis pipeline for CUT&TAG data

eht-imaging

Imaging, analysis, and simulation software for radio interferometry

forking-workflow-exercise

g4--simon-j.-elsasser

gitstu

hisat2

Graph-based alignment (Hierarchical Graph FM index)

ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

isoseq3

IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

macs3

MACS -- Model-based Analysis of ChIP-Seq

mirnaprofiling

miRNA and mRNA profiling of human wounds

miso

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

multi-omics

pythonstu

recipe

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scapture

seacr

SEACR: Sparse Enrichment Analysis for CUT&RUN

spliz_pipeline

Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis

sqanti3

Tool for the Quality Control of Long-Read Defined Transcriptomes

suppa2

SUPPA2: Fast quantification of differential splicing

tidytuesday

Official repo for the #tidytuesday project

tinygrad

You like pytorch? You like micrograd? You love tinygrad! ❤️

tinyutils_awk

Collection of tiny utilities for working on data streams

tobias

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

trinotate

Trinotate source code

trust4--immune-repertoire-reconstruction

TCR and BCR assembly from RNA-seq data

virtus2

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.