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Organization profile

brain

Reservoir computing with coupled genetic oscillators

cellfree_analysis

Here are the routines to read analyse the data obtained from cellfree experiments.

cellmodeller

GPU-accelerated multicellular modelling framework

cellmodeller5

cmstatphys

Statistical physics analysis of CellModeller simulations

colonypicker

A python rutine to manually count colonies on a desired image by clicking each one. You are able to "define" diferent grups.

corchea

Hardware control and analysis for Corchea paper flow device

corchea-1

Paper-fluidic open science hardware for research, teaching and more

corcheaweb

Landing page for Corchea's project

crossfeeding

Repository of crossfeeding data and coding

final-project-ajananias

final-project-ajananias created by GitHub Classroom

final-project-cghernandez

final-project-cghernandez created by GitHub Classroom

final-project-prosimio

final-project-Prosimio created by GitHub Classroom

final-project-ptbravo

final-project-ptbravo created by GitHub Classroom

fluopi

Code and teaching materials for UC/BackyardBrains raspberry pi "macro" scope.

flypi

This is the repository for the flypi project

genephlo

Phase-based genetic logic circuit simulation

infotracking

Informt

inverse_characterization

Accurate Characterization of Dynamic Gene Expression and Growth Rate Profiles

inverters

Code and notebooks to analyze data from plate reader assays which involves proteic and CRISPRi inverters

killifish

CellModeller model files, analysis notebooks, and scripts for modeling annual killifish.

lbs-toehold

loica

Logical Operators for Integrated Cell Algorithms

loica.jl

LOICA but Julia

morphoengineering

CellModeller model files for publication on morphogenetic engineering of bacterial colonies - in submission.

morphoorganismos

napari-popdyn

Napari plugin for quantitative population dynamics analysis

piv

Particle image velocimetry for tracking movement and growth of cells.

popdyn

Population dynamics