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acyper

af2bind

allennlp

An open-source NLP research library, built on PyTorch.

alphaflow

AlphaFold Meets Flow Matching for Generating Protein Ensembles

alphafold

Open source code for AlphaFold.

alphafold2-chinese

中文版AlphaFold2体验

alphafold_pytorch

An implementation of the DeepMind's AlphaFold based on PyTorch for research

ambermdrun

ankh

Ankh: Optimized Protein Language Model

ap-lasr

apptainer

Apptainer: Application containers for Linux

atlas

ATLAS - Three commands to start analyzing your metagenome data

awesome-ggplot2

A curated list of awesome ggplot2 tutorials, packages etc.

bert-loves-chemistry

bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.

bio_embeddings

Get protein embeddings from protein sequences

biopandas

Working with molecular structures in pandas DataFrames

byprot

change-top-web

处理GROMACS非标准残基的在线工具

chroma

A generative model for programmable protein design

clean

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

code-for-turbopetase

code for TubroPETase paper

codonbert

Repository for mRNA Paper and CodonBERT publication.

colabfold

Making Protein folding accessible to all!

contrastive-finetuning-plms

Optimizing protein language models with Sentence Transformers

coves

Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)

d2l-pytorch

This project reproduces the book Dive Into Deep Learning (https://d2l.ai/), adapting the code from MXNet into PyTorch.

d2l-zh

《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。

deep-learning-with-pytorch-tutorials

深度学习与PyTorch入门实战视频教程 配套源代码和PPT

deeplearning-500-questions

深度学习500问，以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述，以帮助自己及有需要的读者。 全书分为18个章节，50余万字。由于水平有限，书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作，联系[email protected] 版权所有，违权必究 Tan 2018.06

deeplearning-biology

A list of deep learning implementations in biology