sa501428 Goto Github PK

2d-convolution-cuda

This is a simple 2d convolution written in cuda c which uses shared memory for better performance

3d-dna

3D de novo assembly (3D DNA) pipeline

3dchromatin_replicateqc

Software to compute reproducibility and quality scores for Hi-C data

abc-enhancer-gene-prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

android-simple-bluetooth-example

Simple Android Bluetooth example to turn on/off radio and to view and connect with devices. Has associated code to connect to an Arduino.

argo-graph-lite

Interactive Graph Visualization in Your Browser

avalon

Android Dev Projects

banditpam

BanditPAM C++ implementation and Python package

chemart

Chemistry of Art

chrmatcher

Matching chrM genotype to known samples

clear-tools

Chromatin Landscape Exploration, Analysis, and Research Tools

clust4j

A suite of classification clustering algorithm implementations for Java. A number of partitional, hierarchical and density-based algorithms including DBSCAN, k-Means, k-Medoids, MeanShift, Affinity Propagation, HDBSCAN and more.

deploy-delta

eigenvector

R functions for very fast eigenvector calculation

excise-hic

Extract data and re-build .hic files

exp-scale

fancyimpute

Multivariate imputation and matrix completion algorithms implemented in Python

gmm

Gaussian Mixture Models in Python

gmm-python

simple gaussian mixture models for demonstration purposes

gputest

Detecting GPU Installation

gradio

Create UIs for prototyping your machine learning model in 3 minutes

hic-downsampler

hic-emt

hic-equals

Evaluate .hic files for identical data

hic-pipeline

HiC uniform processing pipeline

hictoaccessibility

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

java-straw

jheatchart

Automatically exported from code.google.com/p/jheatchart

juicebox

Visualization and analysis software for Hi-C data -