Check dataset creation from list about biotrainer HOT 3 CLOSED

Ok, I believe the probelm is id2emb[idx]? I used Michael's way of dealing with loading embeddings which is not casting them to a type until this very moment, we could just cast the embeddings to np.arrays when they are loaded. I'll see how far I get to fix this in the inference PR

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Yes, that (concatenating all samples to one long numpy array) will work for per_protein tasks (a list of 10 elements each holding a 1024-d array would became a 10x1024 matrix) but for per_residue tasks, you would need to pad all sequences in your set to the longest sequence. This is usually not the desired behavior which is why I kept this list-structure. I also do not see an easy way around this.

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The warning disappeared and the performance seems to be fine, so I will close this issue for now.

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