Comments (1)
Mind that this is prio:low! :)
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Related Issues (20)
- Per-residue predictions differ between batches and single input embeddings
- Implement embeddings calculation "on the fly"
- Split annotations are more complicated than necessary HOT 1
- Add random comparison baseline
- Config - Embeddings - Targets pipeline is inefficient HOT 1
- Class weights need to be sent to the device when use_class_weights=True
- Support multiple hyperparameters for hold_out cross validation
- [ppi] Concat does not work for 0-dimensional (scalar) tensors
- Adding BERT model and protocol = transformer encoder model + masked language modeling (MLM)
- [ppi] Interaction mode not compatible with all protocols yet
- Inferencer does not set correct device
- Create CI and docker image HOT 1
- Create tutorial how-to use a custom embedder
- Update dependencies
- Value Error when Early stopping was engaged HOT 2
- Do a sanity check of the inferencer module
- :woman_scientist: Add LoRA layers to fine-tune protein language models for embeddings calculation
- Look into AI Code suggestions
- elapsed_time_total is misleading
- Improve embeddings saving strategy HOT 1
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