Comments (5)
Hi @inofechm,
This might be a python version issue because of the walrus assignment. (It requires Python>=3.8).
I will double check and I can change it to something that works on 3.7
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Hi @inofechm,
I tried on both 3.7.12 and 3.7.2 and wasn't able to reproduce your error on either.
Can you try setting up a new conda env, and let me know if you still encounter it.
I can remove the walrus operator, but need to confirm if this is the issue first.
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Hi Daniel,
Weird I am still getting the error with a new virtual environment...
I'm not sure I can confirm whether its the walrus operator other than the walrus operator only being added to python in 3.8.
I'm just going to upgrade our HPC's python version.
Thanks for the help
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Hi @inofechm,
I have now removed the walrus assignment on the GH version, you can maybe try installing liana via:
pip install git+https://github.com/saezlab/liana-py
Hope this works!
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Thanks it works now!
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Related Issues (20)
- Clarification regarding hypothesis testing HOT 2
- Sort interactions names in `li.pl.tileplot` by the `orderby` argument HOT 2
- Add aggregate function for MISTy models (extend plots) HOT 3
- By default do not convert views to `csr_matrix` when building `MistyData`. HOT 1
- AttributeError: module 'liana.method' has no attribute 'build_prior_network' HOT 4
- Cellphone DB (and other database versions) HOT 2
- AttributeError: module 'corneto.methods.carnival' has no attribute 'select_mip_solver' HOT 11
- Help understanding causal network output HOT 1
- li.multi.df_to_lr function gave gene Value error HOT 4
- Additional metadata in results dataframe HOT 2
- ValueError: Observations annot. `var` must have as many rows as `X` has columns... HOT 3
- Add bumpversion + metadata
- External + GPU-enabled MISTy models
- Should we exclude CellTalkDB from curated resources list? HOT 4
- The mouse resource are missing important interactions that should be possible to convert HOT 2
- Trouble with liana: 'liana.resource' has no attribute 'explode_complexes' HOT 4
- Implement GPU to speed up the CCC caculation in process of rank_aggregate method (CellChat part)? HOT 1
- Error in function documentation / vignette HOT 2
- Difference on dotplot when running Steady-state Ligand-Receptor inference vignette from the Rank Aggregate section HOT 3
- Generate Union of Causal Net Predictions
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