Comments (4)
In my experience, it is really challenging to install pypath. We have some interns who are neither computer science students nor software engineers and are doing to figure out pypath. They always need our help. A docker image would be worth for any developers.
from pypath.
Hi @ntung, we are currently working on it. The docker image will be provided soon. In the meantime, can you maybe provide your usual setup (OS, python version, etc.)?
from pypath.
In my experience, it is really challenging to install pypath.
Since we recently removed igraph
and hence cairo
from the mandatory dependencies it's not so challenging any more. I think on any operating system one can simply do pip install git+git://github.com/saezlab/pypath.git
from pypath.
Closing as solved
from pypath.
Related Issues (20)
- `ValueError: I/O operation on closed file` in `mapping.py` HOT 1
- Conflict when merging evidences
- GO data retrieval gets stuck on page 670
- Cannot import mapping HOT 3
- Mapping Yeast Uniprot/GeneSymbol/ORF issues
- Database (partially?) down HOT 1
- Interested in an RSE position?
- CellPhoneDB v5 (update and is_ppi flag) HOT 12
- ICELLNET Update HOT 2
- CellChatDB Update
- NicheNet LR prior knowledge
- Trouble importing and accessing omnipath from pypath HOT 13
- AttributeError: module 'pypath.share.common' has no attribute 'DATA' HOT 2
- Cannot retrieve progeny weights for mouse: url for homologene needs to be updated HOT 4
- Unable to load Omnipath HOT 4
- Circular Import errors on the latest version
- Can't import the core module HOT 1
- error: Error -3 while decompressing data: invalid code lengths set HOT 3
- Failed to import mapping from pypath.utils
- NameError: name '_const' is not defined HOT 1
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