Comments (2)
saketkc
commented on September 27, 2024
SSL errors are intermittent from NCBI end. I do not see it anymore:
$ pysradb metadata SRP000941 | head
study_accession study_title experiment_accession experiment_title experiment_desc organism_taxid organism_name library_name library_strategy library_source library_selection library_layout sample_accession sample_title biosample bioproject instrument instrument_model instrument_model_desc total_spots total_size run_accession run_total_spots run_total_bases
SRP000941 UCSD Human Reference Epigenome Mapping Project SRX027874 Reference Epigenome: ChIP-Seq Analysis of H3K9me3 in hESC Cells Reference Epigenome: ChIP-Seq Analysis of H3K9me3 in hESC Cells 9606 Homo sapiens LL218 ChIP-Seq GENOMIC ChIP SINGLE SRS006930 SAMN00004698 <NA> Illumina Genome Analyzer II Illumina Genome Analyzer II ILLUMINA 59041190 1555248627 SRR018453 11642838 419142168from pysradb.
hh1985
commented on September 27, 2024
Just a note: I used proxy. I followed suggestion in github and downgraded the urllib3 to 1.25.11. Problem solved.
conda install urllib3=1.25.11
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Related Issues (20)
- [BUG] cannot download a single experiment from command line HOT 1
- [BUG] aspera HOT 3
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- [BUG] aspera HOT 3
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