Comments (1)
Theres no maximum length currently. There was a bug until about 2.5 years ago which limited very large alignments (v2.3.2 and below), so perhaps an update might solve it? I've run it on files with 15 Gbases without any issue.
from snp-sites.
Related Issues (20)
- error: alignment contains sequences of unequal length HOT 8
- snp-sites docker install issue
- Improvement: let user specify pure and ambiguous bases
- snp-sites for all ~2 million SARS-COV-2 genomes in GISAID HOT 1
- What does *STAR* in ALT stand for HOT 3
- Recommendation for multiple genome alignment HOT 1
- How to understand `monomorphic sites`? HOT 1
- ./configure: line 3036: syntax error near unexpected token `CHECK,check' ./configure: line 3036: `PKG_CHECK_MODULES(CHECK,check >= 0.8.2,have_check="yes",'
- How to specify the reference sequence
- segmentation fault HOT 2
- How to know the interested SNP position in genome?
- Warning: No SNPs were detected so there is nothing to output HOT 1
- why snp-sites generated variations numbers different snippy mapping results
- snps-sites tool help
- snp-sites do not see do deletion events HOT 1
- 32 bit signed integer error HOT 1
- Warning: No SNPs were detected so there is nothing to output HOT 1
- snp-sites -c doesn't produce recognisable alignment for IQtree HOT 1
- How to manage heterozygosity in SNP conversion?
- Is there a way to extract SNP mutations form the VCF file ?
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from snp-sites.