santiagosnchez Goto Github PK
Name: Santiago Sanchez-Ramirez
Type: User
Name: Santiago Sanchez-Ramirez
Type: User
Converts fasta and qual sequences from 454 to fastq
Shell code to retrieve GenBank records from a list of accession numbers (using gnu-parallel)
Generates a codon-based alignment from an amino acid alignment and CDS sequences
Pipeline and workflow for RNA-seq processing, differential expression and allele-specific expression analyses (and more).
Compares reads mapped to two reference and splits best alignments
Concatenates multiple FASTA alignments into a single super-matrix
Concatenates FASTA files, imputes dummy sequences, and prints a partition table
Calculates Kn/Ks distances from two CDS sequences
LSTM for binary DNA sequence classification
Collection of jupyter notebooks for evolutionary biology remote learning
Calculates de number of effective codons Nc for an unaligned of coding sequences in FASTA format
Extracts FASTA records from multiFASTA file based on a list of FASTA headers
Perl script to convert GenBank records to FASTA format
Google Drive CLI Client
Shiny app with a genetic drift simulator
RANDOMLY sorts out IUPAC ambiguities into different haplotypes
Interleaves separated pair-ended FASTQ files
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
A fast multi-threaded k-mer counter
A suit of different functions that can be useful for landscape genetics analyses in R
Mirror of latest lastz from http://www.bx.psu.edu/~rsharris/lastz/ (for automatic cactus installation)
Program for aligning DNA sequences, a pairwise aligner.
Bash shell wrapper to build whole-genome alignments with lastz
Perl/Python scripts that masks bases as "N"s given a PHRED quality score threshold
Separates true pairs into 1 and 2 files and saves unpaired reads
R scripts and functions for microsatellite EBSP
Reorders by-individual consensus FASTQ files into FASTA by-gene alignments
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.